Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
COL5A3P25940 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC19.34■□□□□ 0.69
COL5A3P25940 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC19.34■□□□□ 0.69
COL5A3P25940 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL5A3P25940 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
COL5A3P25940 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC19.34■□□□□ 0.69
COL5A3P25940 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL5A3P25940 RN7SL555P-201ENST00000584742 339 ntBASIC19.34■□□□□ 0.69
COL5A3P25940 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC19.34■□□□□ 0.69
COL5A3P25940 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
COL5A3P25940 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC19.34■□□□□ 0.69
COL5A3P25940 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
COL5A3P25940 AC092364.2-201ENST00000596710 2692 ntBASIC19.34■□□□□ 0.69
COL5A3P25940 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
COL5A3P25940 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC19.34■□□□□ 0.69
COL5A3P25940 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.34■□□□□ 0.69
COL5A3P25940 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.34■□□□□ 0.69
COL5A3P25940 AC008267.1-201ENST00000474858 1069 ntBASIC19.34■□□□□ 0.69
COL5A3P25940 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC19.34■□□□□ 0.69
COL5A3P25940 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC19.34■□□□□ 0.69
COL5A3P25940 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 AC012313.1-201ENST00000593393 3059 ntBASIC19.34■□□□□ 0.69
COL5A3P25940 AC127383.1-201ENST00000444697 1800 ntBASIC19.33■□□□□ 0.69
COL5A3P25940 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL5A3P25940 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL5A3P25940 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC19.33■□□□□ 0.69
COL5A3P25940 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL5A3P25940 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.33■□□□□ 0.69
COL5A3P25940 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.33■□□□□ 0.69
COL5A3P25940 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.33■□□□□ 0.69
COL5A3P25940 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
COL5A3P25940 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.33■□□□□ 0.68
COL5A3P25940 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A3P25940 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
COL5A3P25940 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC19.33■□□□□ 0.68
COL5A3P25940 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A3P25940 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A3P25940 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
COL5A3P25940 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A3P25940 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A3P25940 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A3P25940 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC19.33■□□□□ 0.68
COL5A3P25940 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A3P25940 HLA-J-204ENST00000495278 958 ntBASIC19.33■□□□□ 0.68
COL5A3P25940 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC19.33■□□□□ 0.68
COL5A3P25940 AL162426.1-201ENST00000624141 743 ntBASIC19.33■□□□□ 0.68
COL5A3P25940 AC002472.3-201ENST00000640124 621 ntBASIC19.33■□□□□ 0.68
COL5A3P25940 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A3P25940 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC19.33■□□□□ 0.68
COL5A3P25940 PCDHA12-202ENST00000613593 2588 ntBASIC19.33■□□□□ 0.68
COL5A3P25940 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.33■□□□□ 0.68
COL5A3P25940 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A3P25940 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A3P25940 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL5A3P25940 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC19.32■□□□□ 0.68
COL5A3P25940 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC19.32■□□□□ 0.68
COL5A3P25940 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC19.32■□□□□ 0.68
COL5A3P25940 AC011742.3-201ENST00000439053 820 ntBASIC19.32■□□□□ 0.68
COL5A3P25940 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC19.32■□□□□ 0.68
COL5A3P25940 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC19.32■□□□□ 0.68
COL5A3P25940 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
COL5A3P25940 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC19.32■□□□□ 0.68
COL5A3P25940 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC19.32■□□□□ 0.68
COL5A3P25940 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 AC009093.2-202ENST00000620513 2079 ntBASIC19.32■□□□□ 0.68
COL5A3P25940 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
COL5A3P25940 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
COL5A3P25940 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL5A3P25940 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL5A3P25940 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.32■□□□□ 0.68
COL5A3P25940 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
COL5A3P25940 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.31■□□□□ 0.68
COL5A3P25940 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL5A3P25940 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL5A3P25940 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms