Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 HNRNPA1P32-201ENST00000396326 963 ntBASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 CYGB-203ENST00000589145 788 ntTSL 3 BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 AC106886.4-201ENST00000623557 2502 ntBASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 AC079328.2-201ENST00000561241 3354 ntBASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CSB-PGBD3P0DP91 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 AC091804.1-201ENST00000486888 567 ntBASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 AC006449.6-201ENST00000612330 2296 ntBASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CSB-PGBD3P0DP91 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
CSB-PGBD3P0DP91 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 ADM-202ENST00000524948 584 ntTSL 2 BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 AC079328.1-201ENST00000560358 952 ntBASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CSB-PGBD3P0DP91 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 TPM3P8-201ENST00000330554 643 ntBASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 RNU1-114P-201ENST00000365297 166 ntBASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 KLF2P2-201ENST00000416807 1039 ntBASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 HIST2H2BC-201ENST00000498492 580 ntBASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 COG4-212ENST00000564653 590 ntTSL 5 BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC20.69■□□□□ 0.9
CSB-PGBD3P0DP91 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms