Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB1P09429 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB1P09429 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
HMGB1P09429 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.58■□□□□ 0.57
HMGB1P09429 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
HMGB1P09429 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB1P09429 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.58■□□□□ 0.57
HMGB1P09429 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.58■□□□□ 0.57
HMGB1P09429 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
HMGB1P09429 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB1P09429 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC18.58■□□□□ 0.57
HMGB1P09429 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB1P09429 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB1P09429 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB1P09429 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.58■□□□□ 0.56
HMGB1P09429 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.58■□□□□ 0.56
HMGB1P09429 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.58■□□□□ 0.56
HMGB1P09429 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.58■□□□□ 0.56
HMGB1P09429 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.58■□□□□ 0.56
HMGB1P09429 AC092580.3-201ENST00000430932 139 ntBASIC18.58■□□□□ 0.56
HMGB1P09429 METTL21AP1-201ENST00000438852 635 ntBASIC18.58■□□□□ 0.56
HMGB1P09429 RPL13P2-201ENST00000440687 659 ntBASIC18.58■□□□□ 0.56
HMGB1P09429 AC097493.3-201ENST00000509725 367 ntBASIC18.58■□□□□ 0.56
HMGB1P09429 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.58■□□□□ 0.56
HMGB1P09429 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.58■□□□□ 0.56
HMGB1P09429 AC006538.3-201ENST00000612495 578 ntBASIC18.58■□□□□ 0.56
HMGB1P09429 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.58■□□□□ 0.56
HMGB1P09429 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC18.58■□□□□ 0.56
HMGB1P09429 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC18.58■□□□□ 0.56
HMGB1P09429 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 AC126365.1-201ENST00000578585 1514 ntBASIC18.58■□□□□ 0.56
HMGB1P09429 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB1P09429 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB1P09429 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.57■□□□□ 0.56
HMGB1P09429 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB1P09429 AC138035.3-201ENST00000622706 2791 ntBASIC18.57■□□□□ 0.56
HMGB1P09429 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB1P09429 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB1P09429 AC015922.1-201ENST00000421102 1152 ntBASIC18.57■□□□□ 0.56
HMGB1P09429 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB1P09429 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.57■□□□□ 0.56
HMGB1P09429 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB1P09429 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.57■□□□□ 0.56
HMGB1P09429 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HMGB1P09429 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.57■□□□□ 0.56
HMGB1P09429 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB1P09429 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
HMGB1P09429 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HMGB1P09429 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
HMGB1P09429 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB1P09429 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB1P09429 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.56■□□□□ 0.56
HMGB1P09429 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HMGB1P09429 KRT8P44-201ENST00000441609 1350 ntBASIC18.56■□□□□ 0.56
HMGB1P09429 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HMGB1P09429 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HMGB1P09429 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.56■□□□□ 0.56
HMGB1P09429 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HMGB1P09429 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB1P09429 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms