Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AP001282.1-201ENST00000531301 1499 ntBASIC13.93□□□□□ -0.18
LMX1BO60663 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
LMX1BO60663 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
LMX1BO60663 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
LMX1BO60663 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.92□□□□□ -0.18
LMX1BO60663 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.92□□□□□ -0.18
LMX1BO60663 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.92□□□□□ -0.18
LMX1BO60663 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.92□□□□□ -0.18
LMX1BO60663 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC13.92□□□□□ -0.18
LMX1BO60663 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
LMX1BO60663 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC13.92□□□□□ -0.18
LMX1BO60663 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC13.92□□□□□ -0.18
LMX1BO60663 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC13.92□□□□□ -0.18
LMX1BO60663 TREML5P-201ENST00000421694 576 ntBASIC13.92□□□□□ -0.18
LMX1BO60663 SPCS2P4-201ENST00000436160 681 ntBASIC13.92□□□□□ -0.18
LMX1BO60663 FAM207CP-201ENST00000443486 507 ntBASIC13.92□□□□□ -0.18
LMX1BO60663 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC13.92□□□□□ -0.18
LMX1BO60663 SLC25A39P2-201ENST00000537614 270 ntBASIC13.92□□□□□ -0.18
LMX1BO60663 AC005225.4-201ENST00000557330 545 ntBASIC13.92□□□□□ -0.18
LMX1BO60663 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC13.92□□□□□ -0.18
LMX1BO60663 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 YTHDF3-AS1-201ENST00000603538 718 ntBASIC13.92□□□□□ -0.18
LMX1BO60663 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC13.92□□□□□ -0.18
LMX1BO60663 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 AL390754.1-201ENST00000619088 582 ntBASIC13.92□□□□□ -0.18
LMX1BO60663 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.92□□□□□ -0.18
LMX1BO60663 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
LMX1BO60663 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 FO538757.1-201ENST00000623083 1397 ntBASIC13.92□□□□□ -0.18
LMX1BO60663 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
LMX1BO60663 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
LMX1BO60663 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
LMX1BO60663 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
LMX1BO60663 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMX1BO60663 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC13.91□□□□□ -0.18
LMX1BO60663 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.91□□□□□ -0.18
LMX1BO60663 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.91□□□□□ -0.18
LMX1BO60663 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC13.91□□□□□ -0.18
LMX1BO60663 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
LMX1BO60663 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 CELP-203ENST00000624767 2414 ntTSL 5 BASIC13.91□□□□□ -0.18
LMX1BO60663 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.91□□□□□ -0.18
LMX1BO60663 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 GK-202ENST00000378941 458 ntTSL 3 BASIC13.91□□□□□ -0.18
LMX1BO60663 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
LMX1BO60663 GPS2P2-201ENST00000430745 888 ntBASIC13.91□□□□□ -0.18
LMX1BO60663 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC13.91□□□□□ -0.18
LMX1BO60663 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
LMX1BO60663 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC13.91□□□□□ -0.18
LMX1BO60663 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC13.91□□□□□ -0.18
LMX1BO60663 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC13.91□□□□□ -0.18
LMX1BO60663 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC13.91□□□□□ -0.18
LMX1BO60663 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.91□□□□□ -0.18
LMX1BO60663 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
LMX1BO60663 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
LMX1BO60663 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
LMX1BO60663 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
LMX1BO60663 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
LMX1BO60663 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC13.91□□□□□ -0.18
LMX1BO60663 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMX1BO60663 AC006058.4-201ENST00000624016 1670 ntBASIC13.91□□□□□ -0.18
LMX1BO60663 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms