Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
HDAC3O15379 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.39■□□□□ 0.05
HDAC3O15379 AL138918.1-201ENST00000568306 659 ntBASIC15.39■□□□□ 0.05
HDAC3O15379 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
HDAC3O15379 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.39■□□□□ 0.05
HDAC3O15379 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HDAC3O15379 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
HDAC3O15379 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.39■□□□□ 0.05
HDAC3O15379 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HDAC3O15379 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.39■□□□□ 0.05
HDAC3O15379 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.39■□□□□ 0.05
HDAC3O15379 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.39■□□□□ 0.05
HDAC3O15379 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
HDAC3O15379 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HDAC3O15379 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 FOXO1B-201ENST00000504678 1527 ntBASIC15.38■□□□□ 0.05
HDAC3O15379 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
HDAC3O15379 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 AL136982.4-201ENST00000437689 1740 ntBASIC15.38■□□□□ 0.05
HDAC3O15379 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.38■□□□□ 0.05
HDAC3O15379 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 PHKG1P2-201ENST00000457537 863 ntBASIC15.38■□□□□ 0.05
HDAC3O15379 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.38■□□□□ 0.05
HDAC3O15379 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.38■□□□□ 0.05
HDAC3O15379 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.38■□□□□ 0.05
HDAC3O15379 KRT19P2-202ENST00000557173 1012 ntBASIC15.38■□□□□ 0.05
HDAC3O15379 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.38■□□□□ 0.05
HDAC3O15379 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.38■□□□□ 0.05
HDAC3O15379 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
HDAC3O15379 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.38■□□□□ 0.05
HDAC3O15379 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HDAC3O15379 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
HDAC3O15379 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HDAC3O15379 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
HDAC3O15379 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
HDAC3O15379 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.37■□□□□ 0.05
HDAC3O15379 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HDAC3O15379 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HDAC3O15379 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.37■□□□□ 0.05
HDAC3O15379 AC005912.2-201ENST00000619492 2400 ntBASIC15.37■□□□□ 0.05
HDAC3O15379 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
HDAC3O15379 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
HDAC3O15379 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
HDAC3O15379 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
HDAC3O15379 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.37■□□□□ 0.05
HDAC3O15379 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HDAC3O15379 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
HDAC3O15379 KRT8P37-201ENST00000451609 1420 ntBASIC15.37■□□□□ 0.05
HDAC3O15379 AL359258.3-201ENST00000622910 2331 ntBASIC15.37■□□□□ 0.05
HDAC3O15379 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.37■□□□□ 0.05
HDAC3O15379 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms