Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CUX2O14529 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC26.31■■□□□ 1.8
CUX2O14529 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC26.31■■□□□ 1.8
CUX2O14529 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CUX2O14529 AC114812.1-204ENST00000449669 728 ntBASIC26.31■■□□□ 1.8
CUX2O14529 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC26.31■■□□□ 1.8
CUX2O14529 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC26.31■■□□□ 1.8
CUX2O14529 AC092299.1-201ENST00000632679 757 ntBASIC26.31■■□□□ 1.8
CUX2O14529 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC26.31■■□□□ 1.8
CUX2O14529 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CUX2O14529 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC26.31■■□□□ 1.8
CUX2O14529 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
CUX2O14529 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CUX2O14529 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
CUX2O14529 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC26.3■■□□□ 1.8
CUX2O14529 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX2O14529 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CUX2O14529 RN7SL396P-201ENST00000471086 295 ntBASIC26.3■■□□□ 1.8
CUX2O14529 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC26.3■■□□□ 1.8
CUX2O14529 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CUX2O14529 SNORD3B-2-202ENST00000571722 791 ntBASIC26.3■■□□□ 1.8
CUX2O14529 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC26.3■■□□□ 1.8
CUX2O14529 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
CUX2O14529 AC005618.3-201ENST00000624928 458 ntBASIC26.3■■□□□ 1.8
CUX2O14529 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC26.3■■□□□ 1.8
CUX2O14529 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX2O14529 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC26.3■■□□□ 1.8
CUX2O14529 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX2O14529 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX2O14529 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX2O14529 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX2O14529 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
CUX2O14529 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CUX2O14529 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX2O14529 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC26.3■■□□□ 1.8
CUX2O14529 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC26.3■■□□□ 1.8
CUX2O14529 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC26.3■■□□□ 1.8
CUX2O14529 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC26.3■■□□□ 1.8
CUX2O14529 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CUX2O14529 HLA-DPA2-205ENST00000433582 733 ntBASIC26.3■■□□□ 1.8
CUX2O14529 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC26.3■■□□□ 1.8
CUX2O14529 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC26.3■■□□□ 1.8
CUX2O14529 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC26.3■■□□□ 1.8
CUX2O14529 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC26.29■■□□□ 1.8
CUX2O14529 REXO1L1P-202ENST00000608646 1974 ntBASIC26.29■■□□□ 1.8
CUX2O14529 AC134407.2-201ENST00000625089 1978 ntBASIC26.29■■□□□ 1.8
CUX2O14529 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CUX2O14529 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
CUX2O14529 OS9-205ENST00000413095 1660 ntTSL 2 BASIC26.29■■□□□ 1.8
CUX2O14529 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CUX2O14529 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CUX2O14529 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CUX2O14529 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CUX2O14529 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC26.29■■□□□ 1.8
CUX2O14529 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CUX2O14529 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
CUX2O14529 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CUX2O14529 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
CUX2O14529 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC26.29■■□□□ 1.8
CUX2O14529 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC26.29■■□□□ 1.8
CUX2O14529 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC26.29■■□□□ 1.8
CUX2O14529 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC26.29■■□□□ 1.8
CUX2O14529 AP001282.1-201ENST00000531301 1499 ntBASIC26.29■■□□□ 1.8
CUX2O14529 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CUX2O14529 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
CUX2O14529 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
CUX2O14529 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC26.28■■□□□ 1.8
CUX2O14529 BAK1P1-201ENST00000317045 636 ntBASIC26.28■■□□□ 1.8
CUX2O14529 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC26.28■■□□□ 1.8
CUX2O14529 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC26.28■■□□□ 1.8
CUX2O14529 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC26.28■■□□□ 1.8
CUX2O14529 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC26.28■■□□□ 1.8
CUX2O14529 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC26.28■■□□□ 1.8
CUX2O14529 AC027237.1-201ENST00000560942 655 ntBASIC26.28■■□□□ 1.8
CUX2O14529 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC26.28■■□□□ 1.8
CUX2O14529 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC26.28■■□□□ 1.8
CUX2O14529 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC26.28■■□□□ 1.8
CUX2O14529 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CUX2O14529 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX2O14529 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CUX2O14529 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX2O14529 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CUX2O14529 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CUX2O14529 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC26.27■■□□□ 1.8
CUX2O14529 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC26.27■■□□□ 1.8
CUX2O14529 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms