Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC13.5□□□□□ -0.25
SDCBPO00560 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
SDCBPO00560 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.5□□□□□ -0.25
SDCBPO00560 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.5□□□□□ -0.25
SDCBPO00560 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.5□□□□□ -0.25
SDCBPO00560 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13.5□□□□□ -0.25
SDCBPO00560 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
SDCBPO00560 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC13.5□□□□□ -0.25
SDCBPO00560 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.5□□□□□ -0.25
SDCBPO00560 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC13.5□□□□□ -0.25
SDCBPO00560 AC009090.5-201ENST00000624886 2285 ntBASIC13.5□□□□□ -0.25
SDCBPO00560 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC13.49□□□□□ -0.25
SDCBPO00560 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.49□□□□□ -0.25
SDCBPO00560 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
SDCBPO00560 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC13.49□□□□□ -0.25
SDCBPO00560 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC13.49□□□□□ -0.25
SDCBPO00560 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 AC134407.2-201ENST00000625089 1978 ntBASIC13.49□□□□□ -0.25
SDCBPO00560 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC13.49□□□□□ -0.25
SDCBPO00560 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
SDCBPO00560 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.49□□□□□ -0.25
SDCBPO00560 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
SDCBPO00560 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
SDCBPO00560 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC13.49□□□□□ -0.25
SDCBPO00560 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
SDCBPO00560 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
SDCBPO00560 AC002056.1-201ENST00000395613 760 ntBASIC13.49□□□□□ -0.25
SDCBPO00560 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
SDCBPO00560 AC112191.1-201ENST00000523689 701 ntBASIC13.49□□□□□ -0.25
SDCBPO00560 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
SDCBPO00560 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
SDCBPO00560 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.49□□□□□ -0.25
SDCBPO00560 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.49□□□□□ -0.25
SDCBPO00560 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
SDCBPO00560 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC13.49□□□□□ -0.25
SDCBPO00560 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.49□□□□□ -0.25
SDCBPO00560 AL513190.1-201ENST00000621254 727 ntBASIC13.49□□□□□ -0.25
SDCBPO00560 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
SDCBPO00560 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
SDCBPO00560 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.49□□□□□ -0.25
SDCBPO00560 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.49□□□□□ -0.25
SDCBPO00560 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
SDCBPO00560 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SDCBPO00560 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.48□□□□□ -0.25
SDCBPO00560 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
SDCBPO00560 WASH6P-202ENST00000359512 1437 ntBASIC13.48□□□□□ -0.25
SDCBPO00560 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC13.48□□□□□ -0.25
SDCBPO00560 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.48□□□□□ -0.25
SDCBPO00560 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SDCBPO00560 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
SDCBPO00560 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
SDCBPO00560 AC026748.1-201ENST00000624349 3251 ntBASIC13.48□□□□□ -0.25
SDCBPO00560 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
SDCBPO00560 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SDCBPO00560 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC13.48□□□□□ -0.25
SDCBPO00560 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC13.48□□□□□ -0.25
SDCBPO00560 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SDCBPO00560 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SDCBPO00560 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SDCBPO00560 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SDCBPO00560 TEX30-205ENST00000376029 959 ntTSL 2 BASIC13.48□□□□□ -0.25
SDCBPO00560 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
SDCBPO00560 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC13.48□□□□□ -0.25
SDCBPO00560 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.48□□□□□ -0.25
SDCBPO00560 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.48□□□□□ -0.25
SDCBPO00560 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
SDCBPO00560 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms