Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A1O00337 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A1O00337 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A1O00337 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SLC28A1O00337 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A1O00337 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SLC28A1O00337 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.21■□□□□ 0.03
SLC28A1O00337 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.21■□□□□ 0.03
SLC28A1O00337 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.21■□□□□ 0.03
SLC28A1O00337 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SLC28A1O00337 AC026396.1-201ENST00000419388 421 ntBASIC15.21■□□□□ 0.03
SLC28A1O00337 AL353705.2-201ENST00000428243 662 ntBASIC15.21■□□□□ 0.03
SLC28A1O00337 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.21■□□□□ 0.03
SLC28A1O00337 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.21■□□□□ 0.03
SLC28A1O00337 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.21■□□□□ 0.03
SLC28A1O00337 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A1O00337 AP002414.2-201ENST00000591780 3365 ntBASIC15.21■□□□□ 0.03
SLC28A1O00337 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A1O00337 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SLC28A1O00337 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
SLC28A1O00337 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SLC28A1O00337 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SLC28A1O00337 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.21■□□□□ 0.03
SLC28A1O00337 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.21■□□□□ 0.02
SLC28A1O00337 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.02
SLC28A1O00337 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SLC28A1O00337 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.21■□□□□ 0.02
SLC28A1O00337 AC148477.4-201ENST00000613430 1793 ntBASIC15.21■□□□□ 0.02
SLC28A1O00337 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SLC28A1O00337 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SLC28A1O00337 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SLC28A1O00337 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SLC28A1O00337 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.21■□□□□ 0.02
SLC28A1O00337 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A1O00337 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A1O00337 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A1O00337 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SLC28A1O00337 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SLC28A1O00337 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SLC28A1O00337 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A1O00337 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
SLC28A1O00337 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
SLC28A1O00337 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 AC136604.1-201ENST00000418535 575 ntBASIC15.2■□□□□ 0.02
SLC28A1O00337 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A1O00337 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A1O00337 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.2■□□□□ 0.02
SLC28A1O00337 PGAM5P1-201ENST00000518923 814 ntBASIC15.2■□□□□ 0.02
SLC28A1O00337 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.2■□□□□ 0.02
SLC28A1O00337 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A1O00337 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A1O00337 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A1O00337 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SLC28A1O00337 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SLC28A1O00337 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 OR2I1P-209ENST00000641730 5365 ntBASIC15.2■□□□□ 0.02
SLC28A1O00337 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.2■□□□□ 0.02
SLC28A1O00337 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.2■□□□□ 0.02
SLC28A1O00337 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SLC28A1O00337 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SLC28A1O00337 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SLC28A1O00337 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SLC28A1O00337 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
SLC28A1O00337 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 AL161772.1-201ENST00000610494 4412 ntBASIC15.19■□□□□ 0.02
SLC28A1O00337 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 MYO15B-237ENST00000642007 4893 ntBASIC15.19■□□□□ 0.02
SLC28A1O00337 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
SLC28A1O00337 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SLC28A1O00337 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
SLC28A1O00337 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.19■□□□□ 0.02
SLC28A1O00337 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SLC28A1O00337 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms