Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 AC006504.4-201ENST00000592118 1568 ntBASIC11.6□□□□□ -0.55
SMKR1H3BMG3 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 VMO1-203ENST00000416307 712 ntTSL 2 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 METTL23-204ENST00000586752 904 ntTSL 2 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 AC092329.2-201ENST00000598402 547 ntBASIC11.6□□□□□ -0.55
SMKR1H3BMG3 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 AC004706.3-202ENST00000621574 984 ntBASIC11.6□□□□□ -0.55
SMKR1H3BMG3 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 CCNC-219ENST00000627680 896 ntTSL 5 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 AC012569.1-201ENST00000591191 1524 ntBASIC11.6□□□□□ -0.55
SMKR1H3BMG3 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 AC005332.1-201ENST00000577698 1310 ntBASIC11.6□□□□□ -0.55
SMKR1H3BMG3 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC11.6□□□□□ -0.55
SMKR1H3BMG3 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 AC107918.4-201ENST00000641966 3141 ntBASIC11.59□□□□□ -0.55
SMKR1H3BMG3 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 AC018892.3-201ENST00000623986 2499 ntBASIC11.59□□□□□ -0.55
SMKR1H3BMG3 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 CD99-202ENST00000381180 530 ntTSL 2 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 ELK2BP-201ENST00000415014 1224 ntBASIC11.59□□□□□ -0.55
SMKR1H3BMG3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 PTK2-216ENST00000519881 863 ntTSL 3 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
SMKR1H3BMG3 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms