Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC106794.1-201ENST00000506935 792 ntBASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 AL596087.1-201ENST00000400979 1969 ntBASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 AP000593.2-201ENST00000542775 1433 ntBASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 CEP164P1-201ENST00000455142 418 ntBASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 AC008267.1-201ENST00000474858 1069 ntBASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 AC132192.2-201ENST00000596206 1147 ntBASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SHANK3Q9BYB0 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC19.89■□□□□ 0.78
SHANK3Q9BYB0 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
SHANK3Q9BYB0 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SHANK3Q9BYB0 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.89■□□□□ 0.78
SHANK3Q9BYB0 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SHANK3Q9BYB0 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 MSRA-203ENST00000441698 788 ntTSL 2 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 MESTP3-201ENST00000503460 968 ntBASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 PRKXP1-201ENST00000561423 1122 ntBASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 SYT17-208ENST00000568433 812 ntTSL 3 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 MIR4750-201ENST00000584564 56 ntBASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SHANK3Q9BYB0 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 RN7SL181P-201ENST00000462921 277 ntBASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 AC005324.6-201ENST00000587972 613 ntBASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 HLA-C-210ENST00000640219 976 ntBASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 REXO1L4P-201ENST00000605109 1937 ntBASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 AC004899.1-201ENST00000424687 1714 ntBASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC19.88■□□□□ 0.77
SHANK3Q9BYB0 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK3Q9BYB0 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SHANK3Q9BYB0 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK3Q9BYB0 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK3Q9BYB0 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK3Q9BYB0 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK3Q9BYB0 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK3Q9BYB0 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
SHANK3Q9BYB0 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK3Q9BYB0 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK3Q9BYB0 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SHANK3Q9BYB0 AC106820.2-201ENST00000563775 3264 ntBASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms