Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 PAUPAR-201ENST00000630360 2965 ntBASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 PHKG1P2-201ENST00000457537 863 ntBASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 AC104596.2-201ENST00000512793 793 ntBASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRAIPQ9BWF2 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 CDC14C-201ENST00000428251 1719 ntBASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 AL442647.2-201ENST00000429864 857 ntBASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 ATP5G2P4-201ENST00000442175 420 ntBASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 AC024909.3-201ENST00000611513 2257 ntBASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
TRAIPQ9BWF2 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 AC036164.1-201ENST00000570544 333 ntBASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.27■□□□□ 0.36
TRAIPQ9BWF2 AL008721.1-201ENST00000609964 604 ntBASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms