Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 AC025580.3-201ENST00000617932 1424 ntBASIC13.86□□□□□ -0.19
NKX3-1Q99801 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 PMS2P7-201ENST00000506558 1336 ntBASIC13.86□□□□□ -0.19
NKX3-1Q99801 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 GOLGA2P9-201ENST00000596977 1937 ntBASIC13.86□□□□□ -0.19
NKX3-1Q99801 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 ATP6V0CP3-201ENST00000417255 467 ntBASIC13.85□□□□□ -0.19
NKX3-1Q99801 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 HS6ST1P1-201ENST00000481504 1234 ntBASIC13.85□□□□□ -0.19
NKX3-1Q99801 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 QPRT-203ENST00000562473 579 ntTSL 3 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 AL671883.3-201ENST00000603274 991 ntBASIC13.85□□□□□ -0.19
NKX3-1Q99801 AC140113.2-201ENST00000604370 208 ntBASIC13.85□□□□□ -0.19
NKX3-1Q99801 AC027601.4-201ENST00000611259 610 ntBASIC13.85□□□□□ -0.19
NKX3-1Q99801 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 BCAR1-209ENST00000546196 1340 ntBASIC13.85□□□□□ -0.19
NKX3-1Q99801 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
NKX3-1Q99801 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NKX3-1Q99801 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
NKX3-1Q99801 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
NKX3-1Q99801 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms