Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AC011477.6-201ENST00000604980 1927 ntBASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC14.82□□□□□ -0.04
DEPDC4Q8N2C3 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 AC092183.1-201ENST00000469884 875 ntBASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 SLC25A6P2-201ENST00000497974 877 ntBASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 RIN3-211ENST00000557762 517 ntTSL 3 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 AC096734.2-201ENST00000562054 433 ntBASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 AC010327.4-202ENST00000591484 748 ntBASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 AC023141.13-201ENST00000604991 943 ntBASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
DEPDC4Q8N2C3 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 AC107918.2-201ENST00000530817 355 ntBASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 AC129492.6-201ENST00000611383 1305 ntBASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 TPO-203ENST00000346956 2923 ntTSL 5 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
DEPDC4Q8N2C3 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
DEPDC4Q8N2C3 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms