Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC9.47□□□□□ -0.89
HSPG2P98160 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 MRPL22P1-201ENST00000505398 616 ntBASIC9.47□□□□□ -0.89
HSPG2P98160 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC9.47□□□□□ -0.89
HSPG2P98160 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC9.47□□□□□ -0.89
HSPG2P98160 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC9.47□□□□□ -0.89
HSPG2P98160 AC233280.19-201ENST00000633223 136 ntBASIC9.47□□□□□ -0.89
HSPG2P98160 Z98259.2-201ENST00000641583 609 ntBASIC9.47□□□□□ -0.89
HSPG2P98160 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
HSPG2P98160 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
HSPG2P98160 LSM5-207ENST00000410044 687 ntTSL 3 BASIC9.47□□□□□ -0.89
HSPG2P98160 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC9.47□□□□□ -0.89
HSPG2P98160 AL135901.1-201ENST00000451812 333 ntBASIC9.47□□□□□ -0.89
HSPG2P98160 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC9.47□□□□□ -0.89
HSPG2P98160 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 NEU3-207ENST00000534628 746 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC9.47□□□□□ -0.89
HSPG2P98160 RPS5-204ENST00000598098 536 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
HSPG2P98160 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC9.47□□□□□ -0.89
HSPG2P98160 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 AC022188.1-201ENST00000620960 1664 ntBASIC9.47□□□□□ -0.89
HSPG2P98160 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 HNRNPA1P58-201ENST00000403629 610 ntBASIC9.47□□□□□ -0.89
HSPG2P98160 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC9.47□□□□□ -0.89
HSPG2P98160 AL450472.2-201ENST00000603663 1156 ntBASIC9.47□□□□□ -0.89
HSPG2P98160 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC9.47□□□□□ -0.89
HSPG2P98160 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC9.47□□□□□ -0.89
HSPG2P98160 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 LINC01165-201ENST00000445190 1623 ntBASIC9.47□□□□□ -0.89
HSPG2P98160 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC9.47□□□□□ -0.89
HSPG2P98160 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC9.47□□□□□ -0.89
HSPG2P98160 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC9.47□□□□□ -0.89
HSPG2P98160 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
HSPG2P98160 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC9.46□□□□□ -0.89
HSPG2P98160 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
HSPG2P98160 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
HSPG2P98160 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC9.46□□□□□ -0.89
HSPG2P98160 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC9.46□□□□□ -0.89
HSPG2P98160 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC9.46□□□□□ -0.89
HSPG2P98160 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC9.46□□□□□ -0.89
HSPG2P98160 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC9.46□□□□□ -0.89
HSPG2P98160 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
HSPG2P98160 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC9.46□□□□□ -0.89
HSPG2P98160 INE2-201ENST00000630399 1874 ntBASIC9.46□□□□□ -0.89
HSPG2P98160 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC9.46□□□□□ -0.89
HSPG2P98160 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 LRRC59-203ENST00000576448 1531 ntBASIC9.46□□□□□ -0.89
HSPG2P98160 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
HSPG2P98160 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.9
HSPG2P98160 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC9.46□□□□□ -0.9
HSPG2P98160 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
HSPG2P98160 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC9.46□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms