Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC005702.4-201ENST00000618393 416 ntBASIC14.99□□□□□ -0.01
LIM2P55344 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 AL513477.1-201ENST00000602865 2407 ntBASIC14.99□□□□□ -0.01
LIM2P55344 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
LIM2P55344 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
LIM2P55344 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.98□□□□□ -0.01
LIM2P55344 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.98□□□□□ -0.01
LIM2P55344 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.98□□□□□ -0.01
LIM2P55344 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.98□□□□□ -0.01
LIM2P55344 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.98□□□□□ -0.01
LIM2P55344 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.98□□□□□ -0.01
LIM2P55344 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.98□□□□□ -0.01
LIM2P55344 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.98□□□□□ -0.01
LIM2P55344 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.98□□□□□ -0.01
LIM2P55344 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.98□□□□□ -0.01
LIM2P55344 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.98□□□□□ -0.01
LIM2P55344 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.98□□□□□ -0.01
LIM2P55344 AC009477.1-201ENST00000452936 217 ntBASIC14.98□□□□□ -0.01
LIM2P55344 AC004890.2-204ENST00000481968 304 ntBASIC14.98□□□□□ -0.01
LIM2P55344 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.98□□□□□ -0.01
LIM2P55344 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.98□□□□□ -0.01
LIM2P55344 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.98□□□□□ -0.01
LIM2P55344 ZNF890P-202ENST00000530367 1156 ntBASIC14.98□□□□□ -0.01
LIM2P55344 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.98□□□□□ -0.01
LIM2P55344 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.98□□□□□ -0.01
LIM2P55344 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.98□□□□□ -0.01
LIM2P55344 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.98□□□□□ -0.01
LIM2P55344 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
LIM2P55344 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.98□□□□□ -0.01
LIM2P55344 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
LIM2P55344 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
LIM2P55344 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
LIM2P55344 CICP13-201ENST00000422015 2789 ntBASIC14.98□□□□□ -0.01
LIM2P55344 Z97205.2-201ENST00000564697 1639 ntBASIC14.98□□□□□ -0.01
LIM2P55344 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.98□□□□□ -0.01
LIM2P55344 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
LIM2P55344 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIM2P55344 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 AC020658.6-201ENST00000623564 1870 ntBASIC14.97□□□□□ -0.01
LIM2P55344 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
LIM2P55344 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC14.97□□□□□ -0.01
LIM2P55344 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIM2P55344 MIR770-201ENST00000390219 98 ntBASIC14.97□□□□□ -0.01
LIM2P55344 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.97□□□□□ -0.01
LIM2P55344 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
LIM2P55344 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.97□□□□□ -0.01
LIM2P55344 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.97□□□□□ -0.01
LIM2P55344 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.97□□□□□ -0.01
LIM2P55344 AL512638.1-201ENST00000457493 794 ntBASIC14.97□□□□□ -0.01
LIM2P55344 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.97□□□□□ -0.01
LIM2P55344 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 SDHAP3-202ENST00000515467 728 ntBASIC14.97□□□□□ -0.01
LIM2P55344 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.97□□□□□ -0.01
LIM2P55344 AC044860.1-202ENST00000559481 777 ntBASIC14.97□□□□□ -0.01
LIM2P55344 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.97□□□□□ -0.01
LIM2P55344 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.97□□□□□ -0.01
LIM2P55344 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
LIM2P55344 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms