Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 HTR5BP-201ENST00000430851 1154 ntBASIC15.3■□□□□ 0.04
FOXA1P55317 ACTG1P14-201ENST00000446382 1122 ntBASIC15.3■□□□□ 0.04
FOXA1P55317 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.3■□□□□ 0.04
FOXA1P55317 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.3■□□□□ 0.04
FOXA1P55317 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.3■□□□□ 0.04
FOXA1P55317 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.3■□□□□ 0.04
FOXA1P55317 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.3■□□□□ 0.04
FOXA1P55317 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.3■□□□□ 0.04
FOXA1P55317 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.3■□□□□ 0.04
FOXA1P55317 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.3■□□□□ 0.04
FOXA1P55317 BANF1P1-201ENST00000553684 263 ntBASIC15.3■□□□□ 0.04
FOXA1P55317 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA1P55317 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA1P55317 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA1P55317 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
FOXA1P55317 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA1P55317 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA1P55317 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA1P55317 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
FOXA1P55317 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
FOXA1P55317 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.29■□□□□ 0.04
FOXA1P55317 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.29■□□□□ 0.04
FOXA1P55317 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
FOXA1P55317 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA1P55317 KRT18P58-201ENST00000527480 1120 ntBASIC15.29■□□□□ 0.04
FOXA1P55317 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.29■□□□□ 0.04
FOXA1P55317 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.29■□□□□ 0.04
FOXA1P55317 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA1P55317 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA1P55317 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA1P55317 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
FOXA1P55317 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
FOXA1P55317 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA1P55317 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA1P55317 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA1P55317 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.29■□□□□ 0.04
FOXA1P55317 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.29■□□□□ 0.04
FOXA1P55317 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FOXA1P55317 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
FOXA1P55317 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 NORAD-201ENST00000565493 5339 ntBASIC15.28■□□□□ 0.04
FOXA1P55317 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.28■□□□□ 0.04
FOXA1P55317 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.28■□□□□ 0.04
FOXA1P55317 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 AC136604.1-201ENST00000418535 575 ntBASIC15.28■□□□□ 0.04
FOXA1P55317 AL645939.2-201ENST00000427340 991 ntBASIC15.28■□□□□ 0.04
FOXA1P55317 FAM58DP-201ENST00000428076 619 ntBASIC15.28■□□□□ 0.04
FOXA1P55317 MKNK2P1-201ENST00000437526 628 ntBASIC15.28■□□□□ 0.04
FOXA1P55317 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.28■□□□□ 0.04
FOXA1P55317 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.28■□□□□ 0.04
FOXA1P55317 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.28■□□□□ 0.04
FOXA1P55317 AC022145.2-201ENST00000598203 171 ntBASIC15.28■□□□□ 0.04
FOXA1P55317 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.28■□□□□ 0.04
FOXA1P55317 AL671883.3-201ENST00000603274 991 ntBASIC15.28■□□□□ 0.04
FOXA1P55317 AC026979.3-201ENST00000607315 403 ntBASIC15.28■□□□□ 0.04
FOXA1P55317 AC105339.1-204ENST00000636249 355 ntBASIC15.28■□□□□ 0.04
FOXA1P55317 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
FOXA1P55317 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.28■□□□□ 0.04
FOXA1P55317 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.28■□□□□ 0.04
FOXA1P55317 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms