Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
CLK1P49759 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
CLK1P49759 SSR4P1-203ENST00000599569 2260 ntBASIC14.94□□□□□ -0.02
CLK1P49759 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.94□□□□□ -0.02
CLK1P49759 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
CLK1P49759 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC14.94□□□□□ -0.02
CLK1P49759 FABP5-202ENST00000396359 986 ntTSL 5 BASIC14.94□□□□□ -0.02
CLK1P49759 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC14.94□□□□□ -0.02
CLK1P49759 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.94□□□□□ -0.02
CLK1P49759 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.94□□□□□ -0.02
CLK1P49759 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.94□□□□□ -0.02
CLK1P49759 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CLK1P49759 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.94□□□□□ -0.02
CLK1P49759 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.94□□□□□ -0.02
CLK1P49759 AC026748.1-201ENST00000624349 3251 ntBASIC14.94□□□□□ -0.02
CLK1P49759 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.94□□□□□ -0.02
CLK1P49759 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
CLK1P49759 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.94□□□□□ -0.02
CLK1P49759 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.94□□□□□ -0.02
CLK1P49759 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLK1P49759 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CLK1P49759 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 PCGF3-213ENST00000620529 1899 ntBASIC14.93□□□□□ -0.02
CLK1P49759 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 ACTG1P14-201ENST00000446382 1122 ntBASIC14.93□□□□□ -0.02
CLK1P49759 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
CLK1P49759 KRT18P34-201ENST00000488218 1270 ntBASIC14.93□□□□□ -0.02
CLK1P49759 POLD2P1-201ENST00000511220 997 ntBASIC14.93□□□□□ -0.02
CLK1P49759 CFL1-202ENST00000524553 860 ntTSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.93□□□□□ -0.02
CLK1P49759 FAM86C2P-203ENST00000528684 1004 ntBASIC14.93□□□□□ -0.02
CLK1P49759 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.93□□□□□ -0.02
CLK1P49759 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CLK1P49759 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.93□□□□□ -0.02
CLK1P49759 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.93□□□□□ -0.02
CLK1P49759 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
CLK1P49759 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.93□□□□□ -0.02
CLK1P49759 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLK1P49759 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CLK1P49759 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms