Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HNF4AP41235 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
HNF4AP41235 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
HNF4AP41235 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 CICP13-201ENST00000422015 2789 ntBASIC15.36■□□□□ 0.05
HNF4AP41235 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
HNF4AP41235 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
HNF4AP41235 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 AC018892.3-201ENST00000623986 2499 ntBASIC15.36■□□□□ 0.05
HNF4AP41235 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
HNF4AP41235 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
HNF4AP41235 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.36■□□□□ 0.05
HNF4AP41235 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 AC069262.1-201ENST00000539058 672 ntBASIC15.36■□□□□ 0.05
HNF4AP41235 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.36■□□□□ 0.05
HNF4AP41235 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.36■□□□□ 0.05
HNF4AP41235 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 AC092384.3-202ENST00000564646 2873 ntBASIC15.36■□□□□ 0.05
HNF4AP41235 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.36■□□□□ 0.05
HNF4AP41235 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
HNF4AP41235 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.36■□□□□ 0.05
HNF4AP41235 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
HNF4AP41235 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.36■□□□□ 0.05
HNF4AP41235 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.35■□□□□ 0.05
HNF4AP41235 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
HNF4AP41235 DBET-201ENST00000630918 3363 ntBASIC15.35■□□□□ 0.05
HNF4AP41235 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
HNF4AP41235 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
HNF4AP41235 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 TMBIM7P-203ENST00000641617 1718 ntBASIC15.35■□□□□ 0.05
HNF4AP41235 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.35■□□□□ 0.05
HNF4AP41235 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.35■□□□□ 0.05
HNF4AP41235 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
HNF4AP41235 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.35■□□□□ 0.05
HNF4AP41235 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.35■□□□□ 0.05
HNF4AP41235 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 AC092183.1-201ENST00000469884 875 ntBASIC15.35■□□□□ 0.05
HNF4AP41235 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.35■□□□□ 0.05
HNF4AP41235 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.35■□□□□ 0.05
HNF4AP41235 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.35■□□□□ 0.05
HNF4AP41235 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.35■□□□□ 0.05
HNF4AP41235 MIR4313-201ENST00000580760 101 ntBASIC15.35■□□□□ 0.05
HNF4AP41235 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.35■□□□□ 0.05
HNF4AP41235 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
HNF4AP41235 AC007967.4-201ENST00000614700 386 ntBASIC15.35■□□□□ 0.05
HNF4AP41235 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.35■□□□□ 0.05
HNF4AP41235 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
HNF4AP41235 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HNF4AP41235 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms