Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.15■□□□□ 0.02
MSX2P35548 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
MSX2P35548 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.15■□□□□ 0.02
MSX2P35548 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
MSX2P35548 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.14■□□□□ 0.01
MSX2P35548 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
MSX2P35548 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.14■□□□□ 0.01
MSX2P35548 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
MSX2P35548 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.14■□□□□ 0.01
MSX2P35548 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
MSX2P35548 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 PMS2P4-201ENST00000412466 1052 ntBASIC15.14■□□□□ 0.01
MSX2P35548 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.14■□□□□ 0.01
MSX2P35548 KRT18P27-201ENST00000427733 1299 ntBASIC15.14■□□□□ 0.01
MSX2P35548 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.14■□□□□ 0.01
MSX2P35548 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.14■□□□□ 0.01
MSX2P35548 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC15.14■□□□□ 0.01
MSX2P35548 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 MIR4313-201ENST00000580760 101 ntBASIC15.14■□□□□ 0.01
MSX2P35548 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.14■□□□□ 0.01
MSX2P35548 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.14■□□□□ 0.01
MSX2P35548 AP000550.4-202ENST00000639755 178 ntBASIC15.14■□□□□ 0.01
MSX2P35548 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 WASH6P-202ENST00000359512 1437 ntBASIC15.14■□□□□ 0.01
MSX2P35548 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.14■□□□□ 0.01
MSX2P35548 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
MSX2P35548 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.14■□□□□ 0.01
MSX2P35548 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.14■□□□□ 0.01
MSX2P35548 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.14■□□□□ 0.01
MSX2P35548 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
MSX2P35548 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
MSX2P35548 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.14■□□□□ 0.01
MSX2P35548 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.14■□□□□ 0.01
MSX2P35548 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
MSX2P35548 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.14■□□□□ 0.01
MSX2P35548 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
MSX2P35548 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
MSX2P35548 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.13■□□□□ 0.01
MSX2P35548 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
MSX2P35548 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
MSX2P35548 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
MSX2P35548 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.13■□□□□ 0.01
MSX2P35548 COPS8-203ENST00000409334 794 ntTSL 5 BASIC15.13■□□□□ 0.01
MSX2P35548 GPX1P2-201ENST00000429271 606 ntBASIC15.13■□□□□ 0.01
MSX2P35548 FAM185BP-201ENST00000443595 716 ntBASIC15.13■□□□□ 0.01
MSX2P35548 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
MSX2P35548 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 AC136632.2-201ENST00000512891 861 ntBASIC15.13■□□□□ 0.01
MSX2P35548 IGHV3-65-201ENST00000523210 341 ntBASIC15.13■□□□□ 0.01
MSX2P35548 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
MSX2P35548 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.13■□□□□ 0.01
MSX2P35548 MIR4321-201ENST00000592276 80 ntBASIC15.13■□□□□ 0.01
MSX2P35548 AL445228.2-201ENST00000605589 952 ntBASIC15.13■□□□□ 0.01
MSX2P35548 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.13■□□□□ 0.01
MSX2P35548 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.13■□□□□ 0.01
MSX2P35548 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.13■□□□□ 0.01
MSX2P35548 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
MSX2P35548 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.13■□□□□ 0.01
MSX2P35548 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
MSX2P35548 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MSX2P35548 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.13■□□□□ 0.01
MSX2P35548 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
MSX2P35548 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC15.13■□□□□ 0.01
MSX2P35548 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms