Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 MIR648-201ENST00000385046 94 ntBASIC18.18■□□□□ 0.5
SCN4AP35499 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC18.18■□□□□ 0.5
SCN4AP35499 FOS-204ENST00000554617 796 ntTSL 2 BASIC18.18■□□□□ 0.5
SCN4AP35499 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC18.18■□□□□ 0.5
SCN4AP35499 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC18.18■□□□□ 0.5
SCN4AP35499 RPL35-206ENST00000629845 340 ntTSL 5 BASIC18.18■□□□□ 0.5
SCN4AP35499 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SCN4AP35499 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.18■□□□□ 0.5
SCN4AP35499 SHC1P1-201ENST00000425230 1745 ntBASIC18.18■□□□□ 0.5
SCN4AP35499 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SCN4AP35499 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.18■□□□□ 0.5
SCN4AP35499 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.17■□□□□ 0.5
SCN4AP35499 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SCN4AP35499 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCN4AP35499 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC18.17■□□□□ 0.5
SCN4AP35499 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SCN4AP35499 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCN4AP35499 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SCN4AP35499 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC18.17■□□□□ 0.5
SCN4AP35499 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC18.17■□□□□ 0.5
SCN4AP35499 FAM58BP-201ENST00000439056 645 ntBASIC18.17■□□□□ 0.5
SCN4AP35499 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCN4AP35499 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.17■□□□□ 0.5
SCN4AP35499 TMCO5B-205ENST00000530020 894 ntBASIC18.17■□□□□ 0.5
SCN4AP35499 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC18.17■□□□□ 0.5
SCN4AP35499 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC18.17■□□□□ 0.5
SCN4AP35499 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SCN4AP35499 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.17■□□□□ 0.5
SCN4AP35499 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC18.17■□□□□ 0.5
SCN4AP35499 NAT9-211ENST00000580632 799 ntTSL 3 BASIC18.17■□□□□ 0.5
SCN4AP35499 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC18.17■□□□□ 0.5
SCN4AP35499 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC18.17■□□□□ 0.5
SCN4AP35499 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCN4AP35499 AC055811.4-201ENST00000624039 1754 ntBASIC18.17■□□□□ 0.5
SCN4AP35499 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.17■□□□□ 0.5
SCN4AP35499 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.17■□□□□ 0.5
SCN4AP35499 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SCN4AP35499 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCN4AP35499 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
SCN4AP35499 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.17■□□□□ 0.5
SCN4AP35499 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SCN4AP35499 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SCN4AP35499 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 SOD2-202ENST00000367054 815 ntTSL 2 BASIC18.16■□□□□ 0.5
SCN4AP35499 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC18.16■□□□□ 0.5
SCN4AP35499 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC18.16■□□□□ 0.5
SCN4AP35499 NSD1-211ENST00000511258 809 ntTSL 3 BASIC18.16■□□□□ 0.5
SCN4AP35499 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC18.16■□□□□ 0.5
SCN4AP35499 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.16■□□□□ 0.5
SCN4AP35499 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC18.16■□□□□ 0.5
SCN4AP35499 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC18.16■□□□□ 0.5
SCN4AP35499 MIR4313-201ENST00000580760 101 ntBASIC18.16■□□□□ 0.5
SCN4AP35499 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC18.16■□□□□ 0.5
SCN4AP35499 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC18.16■□□□□ 0.5
SCN4AP35499 AC002472.3-201ENST00000640124 621 ntBASIC18.16■□□□□ 0.5
SCN4AP35499 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SCN4AP35499 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
SCN4AP35499 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.16■□□□□ 0.5
SCN4AP35499 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.16■□□□□ 0.5
SCN4AP35499 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 SERF2-206ENST00000409291 807 ntTSL 3 BASIC18.16■□□□□ 0.5
SCN4AP35499 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC18.16■□□□□ 0.5
SCN4AP35499 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC18.16■□□□□ 0.5
SCN4AP35499 RN7SL258P-201ENST00000478664 300 ntBASIC18.16■□□□□ 0.5
SCN4AP35499 NDUFS6P1-201ENST00000485187 316 ntBASIC18.16■□□□□ 0.5
SCN4AP35499 AC010234.1-201ENST00000494599 870 ntBASIC18.16■□□□□ 0.5
SCN4AP35499 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC18.16■□□□□ 0.5
SCN4AP35499 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.16■□□□□ 0.5
SCN4AP35499 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SCN4AP35499 AC005632.3-201ENST00000605544 308 ntBASIC18.16■□□□□ 0.5
SCN4AP35499 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SCN4AP35499 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.15■□□□□ 0.5
SCN4AP35499 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.15■□□□□ 0.5
SCN4AP35499 ME2P1-201ENST00000426028 1970 ntBASIC18.15■□□□□ 0.5
SCN4AP35499 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
SCN4AP35499 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SCN4AP35499 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SCN4AP35499 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SCN4AP35499 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms