Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.31■□□□□ 0.2
HOXA9P31269 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.31■□□□□ 0.2
HOXA9P31269 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
HOXA9P31269 RIT1-205ENST00000539040 919 ntTSL 2 BASIC16.31■□□□□ 0.2
HOXA9P31269 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.31■□□□□ 0.2
HOXA9P31269 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.31■□□□□ 0.2
HOXA9P31269 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.31■□□□□ 0.2
HOXA9P31269 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.31■□□□□ 0.2
HOXA9P31269 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.31■□□□□ 0.2
HOXA9P31269 BX539320.1-201ENST00000623759 877 ntBASIC16.31■□□□□ 0.2
HOXA9P31269 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
HOXA9P31269 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HOXA9P31269 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
HOXA9P31269 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXA9P31269 AL138709.1-201ENST00000614840 1693 ntBASIC16.3■□□□□ 0.2
HOXA9P31269 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXA9P31269 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HOXA9P31269 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HOXA9P31269 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
HOXA9P31269 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXA9P31269 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXA9P31269 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HOXA9P31269 KRT8P35-201ENST00000483942 1338 ntBASIC16.3■□□□□ 0.2
HOXA9P31269 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXA9P31269 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
HOXA9P31269 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HOXA9P31269 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HOXA9P31269 CD8B2-202ENST00000417670 633 ntBASIC16.3■□□□□ 0.2
HOXA9P31269 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXA9P31269 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXA9P31269 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXA9P31269 FAM86HP-204ENST00000513466 959 ntBASIC16.3■□□□□ 0.2
HOXA9P31269 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXA9P31269 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
HOXA9P31269 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXA9P31269 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXA9P31269 MIR4313-201ENST00000580760 101 ntBASIC16.3■□□□□ 0.2
HOXA9P31269 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXA9P31269 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.3■□□□□ 0.2
HOXA9P31269 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXA9P31269 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXA9P31269 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXA9P31269 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HOXA9P31269 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HOXA9P31269 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXA9P31269 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXA9P31269 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXA9P31269 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HOXA9P31269 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HOXA9P31269 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXA9P31269 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXA9P31269 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXA9P31269 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.29■□□□□ 0.2
HOXA9P31269 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.29■□□□□ 0.2
HOXA9P31269 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXA9P31269 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC16.29■□□□□ 0.2
HOXA9P31269 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXA9P31269 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.29■□□□□ 0.2
HOXA9P31269 AC145423.3-201ENST00000615987 467 ntBASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms