Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HOXD3P31249 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
HOXD3P31249 AZGP1P1-201ENST00000411909 902 ntBASIC12.24□□□□□ -0.45
HOXD3P31249 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC12.24□□□□□ -0.45
HOXD3P31249 HIST3H2BA-201ENST00000436555 524 ntBASIC12.24□□□□□ -0.45
HOXD3P31249 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
HOXD3P31249 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC12.24□□□□□ -0.45
HOXD3P31249 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC12.24□□□□□ -0.45
HOXD3P31249 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC12.24□□□□□ -0.45
HOXD3P31249 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC12.24□□□□□ -0.45
HOXD3P31249 SDHAP3-202ENST00000515467 728 ntBASIC12.24□□□□□ -0.45
HOXD3P31249 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
HOXD3P31249 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC12.24□□□□□ -0.45
HOXD3P31249 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC12.24□□□□□ -0.45
HOXD3P31249 TPRX2P-201ENST00000535362 881 ntBASIC12.24□□□□□ -0.45
HOXD3P31249 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC12.24□□□□□ -0.45
HOXD3P31249 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
HOXD3P31249 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
HOXD3P31249 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
HOXD3P31249 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC12.24□□□□□ -0.45
HOXD3P31249 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC12.24□□□□□ -0.45
HOXD3P31249 TEX48-202ENST00000612244 662 ntTSL 3 BASIC12.24□□□□□ -0.45
HOXD3P31249 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
HOXD3P31249 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
HOXD3P31249 AL109936.8-201ENST00000641772 604 ntBASIC12.24□□□□□ -0.45
HOXD3P31249 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXD3P31249 AC011477.6-201ENST00000604980 1927 ntBASIC12.23□□□□□ -0.45
HOXD3P31249 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXD3P31249 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXD3P31249 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXD3P31249 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
HOXD3P31249 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC12.23□□□□□ -0.45
HOXD3P31249 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
HOXD3P31249 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC12.23□□□□□ -0.45
HOXD3P31249 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXD3P31249 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC12.23□□□□□ -0.45
HOXD3P31249 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC12.23□□□□□ -0.45
HOXD3P31249 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC12.23□□□□□ -0.45
HOXD3P31249 AL450472.2-201ENST00000603663 1156 ntBASIC12.23□□□□□ -0.45
HOXD3P31249 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXD3P31249 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC12.23□□□□□ -0.45
HOXD3P31249 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
HOXD3P31249 LINC02447-202ENST00000501888 2146 ntBASIC12.23□□□□□ -0.45
HOXD3P31249 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC12.23□□□□□ -0.45
HOXD3P31249 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 AC069224.1-201ENST00000566372 1715 ntBASIC12.23□□□□□ -0.45
HOXD3P31249 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
HOXD3P31249 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
HOXD3P31249 AC018695.7-201ENST00000624587 2492 ntBASIC12.22□□□□□ -0.45
HOXD3P31249 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC12.22□□□□□ -0.45
HOXD3P31249 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC12.22□□□□□ -0.45
HOXD3P31249 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC12.22□□□□□ -0.45
HOXD3P31249 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
HOXD3P31249 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms