Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 AC112191.1-201ENST00000523689 701 ntBASIC12.1□□□□□ -0.47
HLA-DMBP28068 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 SNHG9-202ENST00000564014 471 ntBASIC12.1□□□□□ -0.47
HLA-DMBP28068 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 SPTSSB-204ENST00000617024 1292 ntBASIC12.1□□□□□ -0.47
HLA-DMBP28068 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 TKT-202ENST00000423516 2075 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 MIR600HG-201ENST00000449175 5984 ntBASIC12.09□□□□□ -0.47
HLA-DMBP28068 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.09□□□□□ -0.47
HLA-DMBP28068 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 AL135744.1-201ENST00000565098 629 ntBASIC12.09□□□□□ -0.47
HLA-DMBP28068 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 AC061975.2-201ENST00000581722 295 ntBASIC12.09□□□□□ -0.47
HLA-DMBP28068 AC027307.2-201ENST00000591252 911 ntBASIC12.09□□□□□ -0.47
HLA-DMBP28068 AC073389.1-201ENST00000595595 795 ntBASIC12.09□□□□□ -0.47
HLA-DMBP28068 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 AC091812.2-201ENST00000619081 385 ntBASIC12.09□□□□□ -0.47
HLA-DMBP28068 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 AC007326.2-201ENST00000624224 7579 ntBASIC12.09□□□□□ -0.47
HLA-DMBP28068 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HLA-DMBP28068 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HLA-DMBP28068 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.47
HLA-DMBP28068 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HLA-DMBP28068 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.47
HLA-DMBP28068 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.47
HLA-DMBP28068 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.08□□□□□ -0.47
HLA-DMBP28068 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HLA-DMBP28068 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.47
HLA-DMBP28068 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms