Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.29■□□□□ 0.52
ERCC3P19447 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.29■□□□□ 0.52
ERCC3P19447 AC068418.2-201ENST00000577309 3703 ntBASIC18.29■□□□□ 0.52
ERCC3P19447 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
ERCC3P19447 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ERCC3P19447 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.29■□□□□ 0.52
ERCC3P19447 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
ERCC3P19447 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
ERCC3P19447 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
ERCC3P19447 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
ERCC3P19447 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
ERCC3P19447 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
ERCC3P19447 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
ERCC3P19447 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.28■□□□□ 0.52
ERCC3P19447 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC3P19447 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
ERCC3P19447 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.28■□□□□ 0.52
ERCC3P19447 TARDBPP1-201ENST00000442013 1203 ntBASIC18.28■□□□□ 0.52
ERCC3P19447 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.28■□□□□ 0.52
ERCC3P19447 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
ERCC3P19447 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18.28■□□□□ 0.52
ERCC3P19447 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC18.28■□□□□ 0.52
ERCC3P19447 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.28■□□□□ 0.52
ERCC3P19447 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.28■□□□□ 0.52
ERCC3P19447 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 BNIP3P1-202ENST00000550043 1585 ntBASIC18.28■□□□□ 0.52
ERCC3P19447 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
ERCC3P19447 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
ERCC3P19447 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
ERCC3P19447 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
ERCC3P19447 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.28■□□□□ 0.52
ERCC3P19447 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
ERCC3P19447 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.27■□□□□ 0.52
ERCC3P19447 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18.27■□□□□ 0.52
ERCC3P19447 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.27■□□□□ 0.52
ERCC3P19447 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.27■□□□□ 0.52
ERCC3P19447 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.27■□□□□ 0.52
ERCC3P19447 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.27■□□□□ 0.52
ERCC3P19447 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
ERCC3P19447 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
ERCC3P19447 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
ERCC3P19447 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
ERCC3P19447 BOLA2P3-201ENST00000404566 256 ntBASIC18.27■□□□□ 0.52
ERCC3P19447 AL442647.2-201ENST00000429864 857 ntBASIC18.27■□□□□ 0.52
ERCC3P19447 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.27■□□□□ 0.52
ERCC3P19447 AC092658.1-201ENST00000505836 891 ntBASIC18.27■□□□□ 0.52
ERCC3P19447 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.27■□□□□ 0.52
ERCC3P19447 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.27■□□□□ 0.52
ERCC3P19447 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.27■□□□□ 0.52
ERCC3P19447 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.27■□□□□ 0.52
ERCC3P19447 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.27■□□□□ 0.52
ERCC3P19447 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.27■□□□□ 0.52
ERCC3P19447 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.27■□□□□ 0.52
ERCC3P19447 ABBA01031660.1-201ENST00000635219 756 ntBASIC18.27■□□□□ 0.52
ERCC3P19447 ME2P1-201ENST00000426028 1970 ntBASIC18.27■□□□□ 0.52
ERCC3P19447 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.27■□□□□ 0.52
ERCC3P19447 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ERCC3P19447 AC018665.1-201ENST00000622927 1362 ntBASIC18.27■□□□□ 0.51
ERCC3P19447 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
ERCC3P19447 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
ERCC3P19447 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.27■□□□□ 0.51
ERCC3P19447 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
ERCC3P19447 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.27■□□□□ 0.51
ERCC3P19447 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms