Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.23■□□□□ 0.35
COL6A1P12109 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
COL6A1P12109 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 TPM3P8-201ENST00000330554 643 ntBASIC17.23■□□□□ 0.35
COL6A1P12109 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
COL6A1P12109 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A1P12109 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A1P12109 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 KLF2P2-201ENST00000416807 1039 ntBASIC17.23■□□□□ 0.35
COL6A1P12109 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL6A1P12109 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC17.23■□□□□ 0.35
COL6A1P12109 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC17.23■□□□□ 0.35
COL6A1P12109 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
COL6A1P12109 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC17.23■□□□□ 0.35
COL6A1P12109 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.23■□□□□ 0.35
COL6A1P12109 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.23■□□□□ 0.35
COL6A1P12109 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
COL6A1P12109 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
COL6A1P12109 AL133499.1-201ENST00000596207 608 ntBASIC17.23■□□□□ 0.35
COL6A1P12109 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC17.23■□□□□ 0.35
COL6A1P12109 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC17.23■□□□□ 0.35
COL6A1P12109 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.23■□□□□ 0.35
COL6A1P12109 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A1P12109 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC17.23■□□□□ 0.35
COL6A1P12109 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC17.23■□□□□ 0.35
COL6A1P12109 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
COL6A1P12109 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
COL6A1P12109 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A1P12109 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.23■□□□□ 0.35
COL6A1P12109 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A1P12109 ME2P1-201ENST00000426028 1970 ntBASIC17.22■□□□□ 0.35
COL6A1P12109 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.22■□□□□ 0.35
COL6A1P12109 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A1P12109 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL6A1P12109 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.22■□□□□ 0.35
COL6A1P12109 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A1P12109 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
COL6A1P12109 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A1P12109 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A1P12109 EEF1DP6-201ENST00000449232 372 ntBASIC17.22■□□□□ 0.35
COL6A1P12109 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
COL6A1P12109 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A1P12109 AC022217.1-201ENST00000521069 738 ntBASIC17.22■□□□□ 0.35
COL6A1P12109 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC17.22■□□□□ 0.35
COL6A1P12109 AL645939.5-201ENST00000606834 243 ntBASIC17.22■□□□□ 0.35
COL6A1P12109 AP003419.4-201ENST00000616071 517 ntBASIC17.22■□□□□ 0.35
COL6A1P12109 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
COL6A1P12109 AC020916.1-201ENST00000587762 1774 ntBASIC17.22■□□□□ 0.35
COL6A1P12109 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A1P12109 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A1P12109 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A1P12109 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A1P12109 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.21■□□□□ 0.35
COL6A1P12109 RNU1-114P-201ENST00000365297 166 ntBASIC17.21■□□□□ 0.35
COL6A1P12109 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A1P12109 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 AC114812.1-204ENST00000449669 728 ntBASIC17.21■□□□□ 0.35
COL6A1P12109 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A1P12109 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.21■□□□□ 0.35
COL6A1P12109 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC17.21■□□□□ 0.35
COL6A1P12109 AL353726.2-201ENST00000623259 884 ntBASIC17.21■□□□□ 0.35
COL6A1P12109 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A1P12109 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A1P12109 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A1P12109 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A1P12109 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms