Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC023024.2-201ENST00000623561 1993 ntBASIC15.96■□□□□ 0.15
VIMP08670 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 AC006504.5-208ENST00000588784 2401 ntBASIC15.96■□□□□ 0.15
VIMP08670 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
VIMP08670 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
VIMP08670 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
VIMP08670 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
VIMP08670 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
VIMP08670 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
VIMP08670 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
VIMP08670 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.95■□□□□ 0.14
VIMP08670 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
VIMP08670 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.95■□□□□ 0.14
VIMP08670 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
VIMP08670 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 POM121L3P-201ENST00000419331 1163 ntBASIC15.95■□□□□ 0.14
VIMP08670 AL136038.3-201ENST00000561909 1096 ntBASIC15.95■□□□□ 0.14
VIMP08670 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.95■□□□□ 0.14
VIMP08670 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC15.95■□□□□ 0.14
VIMP08670 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.95■□□□□ 0.14
VIMP08670 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
VIMP08670 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.95■□□□□ 0.14
VIMP08670 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VIMP08670 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
VIMP08670 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.94■□□□□ 0.14
VIMP08670 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.94■□□□□ 0.14
VIMP08670 AL359183.1-201ENST00000623796 2132 ntBASIC15.94■□□□□ 0.14
VIMP08670 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.94■□□□□ 0.14
VIMP08670 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.94■□□□□ 0.14
VIMP08670 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.94■□□□□ 0.14
VIMP08670 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
VIMP08670 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC15.94■□□□□ 0.14
VIMP08670 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.94■□□□□ 0.14
VIMP08670 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.94■□□□□ 0.14
VIMP08670 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
VIMP08670 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC15.94■□□□□ 0.14
VIMP08670 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.94■□□□□ 0.14
VIMP08670 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
VIMP08670 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
VIMP08670 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.94■□□□□ 0.14
VIMP08670 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.94■□□□□ 0.14
VIMP08670 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
VIMP08670 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VIMP08670 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms