Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 LINC01115-203ENST00000606068 577 ntBASIC14.55□□□□□ -0.08
NKX2-2O95096 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.55□□□□□ -0.08
NKX2-2O95096 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
NKX2-2O95096 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.55□□□□□ -0.08
NKX2-2O95096 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
NKX2-2O95096 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.55□□□□□ -0.08
NKX2-2O95096 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.55□□□□□ -0.08
NKX2-2O95096 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
NKX2-2O95096 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.54□□□□□ -0.08
NKX2-2O95096 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.54□□□□□ -0.08
NKX2-2O95096 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.54□□□□□ -0.08
NKX2-2O95096 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.54□□□□□ -0.08
NKX2-2O95096 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.54□□□□□ -0.08
NKX2-2O95096 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
NKX2-2O95096 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.54□□□□□ -0.08
NKX2-2O95096 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
NKX2-2O95096 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.54□□□□□ -0.08
NKX2-2O95096 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.54□□□□□ -0.08
NKX2-2O95096 AC093512.1-201ENST00000617969 520 ntBASIC14.54□□□□□ -0.08
NKX2-2O95096 AF228730.6-201ENST00000641497 218 ntBASIC14.54□□□□□ -0.08
NKX2-2O95096 AC084121.3-201ENST00000641716 218 ntBASIC14.54□□□□□ -0.08
NKX2-2O95096 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
NKX2-2O95096 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
NKX2-2O95096 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
NKX2-2O95096 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.54□□□□□ -0.08
NKX2-2O95096 AL109954.1-202ENST00000564051 2148 ntBASIC14.54□□□□□ -0.08
NKX2-2O95096 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.08
NKX2-2O95096 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 C18orf15-201ENST00000623680 2534 ntBASIC14.54□□□□□ -0.08
NKX2-2O95096 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-2O95096 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
NKX2-2O95096 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX2-2O95096 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.53□□□□□ -0.08
NKX2-2O95096 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX2-2O95096 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX2-2O95096 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.53□□□□□ -0.08
NKX2-2O95096 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.53□□□□□ -0.08
NKX2-2O95096 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX2-2O95096 BTBD7P1-201ENST00000447253 1453 ntBASIC14.53□□□□□ -0.08
NKX2-2O95096 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.53□□□□□ -0.08
NKX2-2O95096 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.53□□□□□ -0.08
NKX2-2O95096 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.53□□□□□ -0.08
NKX2-2O95096 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
NKX2-2O95096 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
NKX2-2O95096 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.53□□□□□ -0.08
NKX2-2O95096 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
NKX2-2O95096 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-2O95096 RPL5P21-201ENST00000404620 815 ntBASIC14.53□□□□□ -0.08
NKX2-2O95096 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.53□□□□□ -0.08
NKX2-2O95096 PMS2P2-201ENST00000425039 1128 ntBASIC14.53□□□□□ -0.08
NKX2-2O95096 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
NKX2-2O95096 AC114501.2-201ENST00000439631 535 ntBASIC14.53□□□□□ -0.08
NKX2-2O95096 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.53□□□□□ -0.08
NKX2-2O95096 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms