Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 GNAQP1-201ENST00000444815 1067 ntBASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 IGHV3-71-201ENST00000523324 359 ntBASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 AL512361.1-201ENST00000554200 418 ntBASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TMX2-CTNND1H3BSU7 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 U91328.1-201ENST00000437528 223 ntBASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 SRD5A3P1-201ENST00000603021 949 ntBASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 AC017083.2-201ENST00000608069 979 ntBASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 AL162274.1-201ENST00000617191 1098 ntBASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
TMX2-CTNND1H3BSU7 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TMX2-CTNND1H3BSU7 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TMX2-CTNND1H3BSU7 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TMX2-CTNND1H3BSU7 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TMX2-CTNND1H3BSU7 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.54■□□□□ 0.08
TMX2-CTNND1H3BSU7 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TMX2-CTNND1H3BSU7 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TMX2-CTNND1H3BSU7 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms