Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 AC023908.3-201ENST00000564211 3047 ntBASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 HMGA1P7-201ENST00000406908 502 ntBASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 KRT18P67-201ENST00000432816 1264 ntBASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 AC092910.1-201ENST00000482027 1129 ntBASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 AC108751.1-201ENST00000490852 363 ntBASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 CIPC-205ENST00000555437 566 ntTSL 3 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 AL109954.1-202ENST00000564051 2148 ntBASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 TP73-AS1-207ENST00000624167 988 ntBASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 AC136621.1-201ENST00000624017 2304 ntBASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CHMP1AQ9HD42 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CHMP1AQ9HD42 AC026748.1-201ENST00000624349 3251 ntBASIC13.71□□□□□ -0.22
CHMP1AQ9HD42 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC13.71□□□□□ -0.22
CHMP1AQ9HD42 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CHMP1AQ9HD42 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CHMP1AQ9HD42 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
CHMP1AQ9HD42 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CHMP1AQ9HD42 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CHMP1AQ9HD42 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
CHMP1AQ9HD42 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
CHMP1AQ9HD42 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 MED22-202ENST00000371999 987 ntTSL 3 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 HAUS4P1-201ENST00000406739 1145 ntBASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 HNRNPDP1-201ENST00000439535 754 ntBASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 AC012640.2-201ENST00000561606 901 ntBASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 AL121912.1-201ENST00000603683 238 ntBASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 AC117500.6-201ENST00000624871 588 ntBASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.7□□□□□ -0.22
CHMP1AQ9HD42 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.69□□□□□ -0.22
CHMP1AQ9HD42 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms