Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC20.08■□□□□ 0.8
CHMP4AQ9BY43 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 RPL5P21-201ENST00000404620 815 ntBASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 AC005034.1-201ENST00000426657 489 ntBASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 MDH2-205ENST00000461263 648 ntTSL 2 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 RBM7-207ENST00000544582 692 ntTSL 3 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 AC093813.1-201ENST00000605066 256 ntBASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CHMP4AQ9BY43 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 TBCB-211ENST00000589996 724 ntTSL 3 BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 AL033527.5-201ENST00000641382 801 ntBASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 AMT-232ENST00000636199 1546 ntTSL 5 BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CHMP4AQ9BY43 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 FER1L4-210ENST00000615531 5998 ntBASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC20.05■□□□□ 0.8
CHMP4AQ9BY43 POLE2-203ENST00000553805 496 ntTSL 2 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms