Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 SLC7A15P-201ENST00000424028 1363 ntBASIC14.73□□□□□ -0.05
BEST3Q8N1M1 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
BEST3Q8N1M1 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC138969.3-201ENST00000546612 1459 ntBASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC138932.2-201ENST00000548268 1459 ntBASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC126755.4-201ENST00000549796 1459 ntBASIC14.72□□□□□ -0.05
BEST3Q8N1M1 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AZGP1P1-201ENST00000411909 902 ntBASIC14.72□□□□□ -0.05
BEST3Q8N1M1 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 CR383656.12-201ENST00000549567 513 ntBASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC023310.3-201ENST00000557027 670 ntBASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC100756.1-201ENST00000562736 682 ntBASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC138749.3-201ENST00000567691 622 ntBASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC116165.1-201ENST00000611806 668 ntBASIC14.72□□□□□ -0.05
BEST3Q8N1M1 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 KRT8P37-201ENST00000451609 1420 ntBASIC14.72□□□□□ -0.05
BEST3Q8N1M1 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.72□□□□□ -0.05
BEST3Q8N1M1 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
BEST3Q8N1M1 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms