Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC65Q8IXS2 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC65Q8IXS2 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC65Q8IXS2 AC127383.1-201ENST00000444697 1800 ntBASIC17.56■□□□□ 0.4
CCDC65Q8IXS2 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC65Q8IXS2 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC65Q8IXS2 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC65Q8IXS2 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CCDC65Q8IXS2 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC65Q8IXS2 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 AC090616.6-203ENST00000579186 1945 ntBASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 TEX28P1-201ENST00000613479 1221 ntBASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 TEX28P2-201ENST00000617764 1221 ntBASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 AC136621.1-201ENST00000624017 2304 ntBASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC65Q8IXS2 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 AC092384.3-202ENST00000564646 2873 ntBASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 TARDBPP1-201ENST00000442013 1203 ntBASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC65Q8IXS2 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC65Q8IXS2 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms