Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 OR10B1P-201ENST00000601666 907 ntBASIC21.1■□□□□ 0.97
NPHP3Q7Z494 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 AC026740.1-201ENST00000607068 791 ntBASIC21.1■□□□□ 0.97
NPHP3Q7Z494 AL023803.2-201ENST00000620080 638 ntBASIC21.1■□□□□ 0.97
NPHP3Q7Z494 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NPHP3Q7Z494 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 DPM3-202ENST00000368399 517 ntBASIC21.09■□□□□ 0.97
NPHP3Q7Z494 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 AL596276.2-201ENST00000447525 331 ntBASIC21.09■□□□□ 0.97
NPHP3Q7Z494 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 AC013355.1-201ENST00000562625 723 ntBASIC21.09■□□□□ 0.97
NPHP3Q7Z494 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP3Q7Z494 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 KRT8P29-201ENST00000420409 1371 ntBASIC21.08■□□□□ 0.97
NPHP3Q7Z494 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 CHMP1AP1-201ENST00000445563 662 ntBASIC21.08■□□□□ 0.97
NPHP3Q7Z494 AC104784.1-201ENST00000473096 294 ntBASIC21.08■□□□□ 0.97
NPHP3Q7Z494 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 MIR4750-201ENST00000584564 56 ntBASIC21.08■□□□□ 0.97
NPHP3Q7Z494 RN7SL555P-201ENST00000584742 339 ntBASIC21.08■□□□□ 0.97
NPHP3Q7Z494 AF254983.2-201ENST00000612331 135 ntBASIC21.08■□□□□ 0.97
NPHP3Q7Z494 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC21.08■□□□□ 0.97
NPHP3Q7Z494 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPHP3Q7Z494 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
NPHP3Q7Z494 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
NPHP3Q7Z494 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC21.08■□□□□ 0.96
NPHP3Q7Z494 AC005052.1-201ENST00000625181 2492 ntBASIC21.08■□□□□ 0.96
NPHP3Q7Z494 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.96
NPHP3Q7Z494 KRT8P14-201ENST00000414254 1442 ntBASIC21.08■□□□□ 0.96
NPHP3Q7Z494 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPHP3Q7Z494 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPHP3Q7Z494 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 AC106794.1-201ENST00000506935 792 ntBASIC21.07■□□□□ 0.96
NPHP3Q7Z494 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 KRT8P4-201ENST00000509735 1454 ntBASIC21.07■□□□□ 0.96
NPHP3Q7Z494 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
NPHP3Q7Z494 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms