Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
CX3CL1P78423 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 AL009178.2-201ENST00000597278 2719 ntBASIC12.82□□□□□ -0.36
CX3CL1P78423 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CL1P78423 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
CX3CL1P78423 AC008677.1-201ENST00000519230 1561 ntBASIC12.81□□□□□ -0.36
CX3CL1P78423 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CL1P78423 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CX3CL1P78423 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CL1P78423 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CL1P78423 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC12.81□□□□□ -0.36
CX3CL1P78423 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 GPS2P2-201ENST00000430745 888 ntBASIC12.81□□□□□ -0.36
CX3CL1P78423 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC12.81□□□□□ -0.36
CX3CL1P78423 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC12.81□□□□□ -0.36
CX3CL1P78423 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC12.81□□□□□ -0.36
CX3CL1P78423 GATD1-206ENST00000526325 756 ntTSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC12.81□□□□□ -0.36
CX3CL1P78423 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC12.81□□□□□ -0.36
CX3CL1P78423 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC12.81□□□□□ -0.36
CX3CL1P78423 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CL1P78423 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CX3CL1P78423 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CL1P78423 GOLGA6L17P-202ENST00000614358 1398 ntBASIC12.81□□□□□ -0.36
CX3CL1P78423 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC12.8□□□□□ -0.36
CX3CL1P78423 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CX3CL1P78423 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CX3CL1P78423 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.8□□□□□ -0.36
CX3CL1P78423 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC12.8□□□□□ -0.36
CX3CL1P78423 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 AP001282.1-201ENST00000531301 1499 ntBASIC12.8□□□□□ -0.36
CX3CL1P78423 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC12.8□□□□□ -0.36
CX3CL1P78423 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
CX3CL1P78423 RPL30-202ENST00000396070 440 ntTSL 2 BASIC12.8□□□□□ -0.36
CX3CL1P78423 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC12.8□□□□□ -0.36
CX3CL1P78423 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC12.8□□□□□ -0.36
CX3CL1P78423 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CX3CL1P78423 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC12.8□□□□□ -0.36
CX3CL1P78423 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC12.8□□□□□ -0.36
CX3CL1P78423 AC243562.2-201ENST00000561247 970 ntBASIC12.8□□□□□ -0.36
CX3CL1P78423 AC026150.2-201ENST00000564693 1156 ntBASIC12.8□□□□□ -0.36
CX3CL1P78423 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CX3CL1P78423 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC12.8□□□□□ -0.36
CX3CL1P78423 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC12.8□□□□□ -0.36
CX3CL1P78423 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC12.8□□□□□ -0.36
CX3CL1P78423 AC018529.1-201ENST00000613063 361 ntBASIC12.8□□□□□ -0.36
CX3CL1P78423 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
CX3CL1P78423 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms