Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RIPK4P57078 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RIPK4P57078 TK1-203ENST00000588734 1681 ntTSL 2 BASIC20.61■□□□□ 0.89
RIPK4P57078 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC20.61■□□□□ 0.89
RIPK4P57078 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
RIPK4P57078 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
RIPK4P57078 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 RERG-209ENST00000546331 1383 ntTSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 AC127383.1-201ENST00000444697 1800 ntBASIC20.6■□□□□ 0.89
RIPK4P57078 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
RIPK4P57078 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC20.6■□□□□ 0.89
RIPK4P57078 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC20.6■□□□□ 0.89
RIPK4P57078 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
RIPK4P57078 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 ELK1P1-201ENST00000485699 580 ntBASIC20.6■□□□□ 0.89
RIPK4P57078 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.6■□□□□ 0.89
RIPK4P57078 AC027307.3-201ENST00000594262 1100 ntBASIC20.6■□□□□ 0.89
RIPK4P57078 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
RIPK4P57078 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
RIPK4P57078 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.6■□□□□ 0.89
RIPK4P57078 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC20.6■□□□□ 0.89
RIPK4P57078 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RIPK4P57078 AC092850.2-201ENST00000623821 2697 ntBASIC20.6■□□□□ 0.89
RIPK4P57078 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC20.59■□□□□ 0.89
RIPK4P57078 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
RIPK4P57078 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RIPK4P57078 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC20.59■□□□□ 0.89
RIPK4P57078 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC20.59■□□□□ 0.89
RIPK4P57078 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 CYP2AB1P-202ENST00000454440 1456 ntBASIC20.59■□□□□ 0.89
RIPK4P57078 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RIPK4P57078 COPE-202ENST00000349893 948 ntTSL 2 BASIC20.59■□□□□ 0.89
RIPK4P57078 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 FAM86LP-201ENST00000478302 853 ntBASIC20.59■□□□□ 0.89
RIPK4P57078 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC20.59■□□□□ 0.89
RIPK4P57078 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC20.59■□□□□ 0.89
RIPK4P57078 AL596325.1-201ENST00000563991 1082 ntBASIC20.59■□□□□ 0.89
RIPK4P57078 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.59■□□□□ 0.89
RIPK4P57078 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.59■□□□□ 0.89
RIPK4P57078 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC20.59■□□□□ 0.89
RIPK4P57078 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RIPK4P57078 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 F11R-206ENST00000621309 4770 ntTSL 5 BASIC20.59■□□□□ 0.89
RIPK4P57078 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RIPK4P57078 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RIPK4P57078 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
RIPK4P57078 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RIPK4P57078 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RIPK4P57078 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC20.58■□□□□ 0.89
RIPK4P57078 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RIPK4P57078 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RIPK4P57078 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
RIPK4P57078 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RIPK4P57078 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
RIPK4P57078 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC20.58■□□□□ 0.89
RIPK4P57078 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
RIPK4P57078 GSAP-205ENST00000430584 600 ntTSL 5 BASIC20.58■□□□□ 0.89
RIPK4P57078 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RIPK4P57078 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.58■□□□□ 0.89
RIPK4P57078 KRT18P43-201ENST00000469825 1281 ntBASIC20.58■□□□□ 0.89
RIPK4P57078 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RIPK4P57078 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.58■□□□□ 0.89
RIPK4P57078 AC036164.1-201ENST00000570544 333 ntBASIC20.58■□□□□ 0.89
RIPK4P57078 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RIPK4P57078 SRP9-204ENST00000619790 377 ntTSL 2 BASIC20.58■□□□□ 0.89
RIPK4P57078 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms