Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC21.52■■□□□ 1.04
MSH6P52701 OR10B1P-201ENST00000601666 907 ntBASIC21.52■■□□□ 1.04
MSH6P52701 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH6P52701 LRRC59-203ENST00000576448 1531 ntBASIC21.52■■□□□ 1.04
MSH6P52701 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH6P52701 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MSH6P52701 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH6P52701 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC21.52■■□□□ 1.04
MSH6P52701 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC21.52■■□□□ 1.04
MSH6P52701 AC105020.1-201ENST00000435356 2205 ntBASIC21.52■■□□□ 1.04
MSH6P52701 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC21.52■■□□□ 1.04
MSH6P52701 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MSH6P52701 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
MSH6P52701 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
MSH6P52701 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
MSH6P52701 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
MSH6P52701 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC21.52■■□□□ 1.03
MSH6P52701 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
MSH6P52701 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
MSH6P52701 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
MSH6P52701 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH6P52701 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH6P52701 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
MSH6P52701 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH6P52701 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
MSH6P52701 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
MSH6P52701 RPSAP31-201ENST00000416648 895 ntBASIC21.51■■□□□ 1.03
MSH6P52701 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC21.51■■□□□ 1.03
MSH6P52701 AC006335.1-201ENST00000445200 547 ntBASIC21.51■■□□□ 1.03
MSH6P52701 AC021723.1-201ENST00000486306 515 ntBASIC21.51■■□□□ 1.03
MSH6P52701 AC116345.2-201ENST00000512837 523 ntBASIC21.51■■□□□ 1.03
MSH6P52701 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC21.51■■□□□ 1.03
MSH6P52701 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC21.51■■□□□ 1.03
MSH6P52701 MIR6756-201ENST00000616240 63 ntBASIC21.51■■□□□ 1.03
MSH6P52701 GPR39-203ENST00000622084 900 ntTSL 5 BASIC21.51■■□□□ 1.03
MSH6P52701 LTB4R2-202ENST00000528054 3092 ntBASIC21.51■■□□□ 1.03
MSH6P52701 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH6P52701 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH6P52701 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
MSH6P52701 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC21.51■■□□□ 1.03
MSH6P52701 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
MSH6P52701 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
MSH6P52701 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
MSH6P52701 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH6P52701 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH6P52701 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
MSH6P52701 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH6P52701 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH6P52701 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
MSH6P52701 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
MSH6P52701 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH6P52701 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC21.5■■□□□ 1.03
MSH6P52701 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC21.5■■□□□ 1.03
MSH6P52701 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC21.5■■□□□ 1.03
MSH6P52701 AP003171.2-201ENST00000528208 925 ntBASIC21.5■■□□□ 1.03
MSH6P52701 EID1-202ENST00000560490 584 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH6P52701 AC103988.2-201ENST00000561804 725 ntBASIC21.5■■□□□ 1.03
MSH6P52701 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH6P52701 UBL5-208ENST00000593087 320 ntTSL 3 BASIC21.5■■□□□ 1.03
MSH6P52701 AC020922.3-201ENST00000595064 547 ntBASIC21.5■■□□□ 1.03
MSH6P52701 AC025181.2-201ENST00000606994 802 ntBASIC21.5■■□□□ 1.03
MSH6P52701 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
MSH6P52701 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC21.5■■□□□ 1.03
MSH6P52701 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC21.5■■□□□ 1.03
MSH6P52701 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC21.5■■□□□ 1.03
MSH6P52701 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
MSH6P52701 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC21.5■■□□□ 1.03
MSH6P52701 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC21.5■■□□□ 1.03
MSH6P52701 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 KRT8P4-201ENST00000509735 1454 ntBASIC21.5■■□□□ 1.03
MSH6P52701 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
MSH6P52701 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH6P52701 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MSH6P52701 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
MSH6P52701 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC21.49■■□□□ 1.03
MSH6P52701 AC026316.1-201ENST00000398900 414 ntBASIC21.49■■□□□ 1.03
MSH6P52701 AC234644.1-201ENST00000406065 370 ntBASIC21.49■■□□□ 1.03
MSH6P52701 AL353637.1-201ENST00000451571 732 ntBASIC21.49■■□□□ 1.03
MSH6P52701 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH6P52701 AC100850.1-201ENST00000506768 649 ntBASIC21.49■■□□□ 1.03
MSH6P52701 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH6P52701 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH6P52701 WDR7-208ENST00000589935 544 ntTSL 4 BASIC21.49■■□□□ 1.03
MSH6P52701 BNIP3P13-201ENST00000599968 566 ntBASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms