Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL590640.2-201ENST00000457038 527 ntBASIC18.2■□□□□ 0.5
CTCFP49711 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
CTCFP49711 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 AF254983.2-201ENST00000612331 135 ntBASIC18.2■□□□□ 0.5
CTCFP49711 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC18.2■□□□□ 0.5
CTCFP49711 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.2■□□□□ 0.5
CTCFP49711 KRT8P39-201ENST00000396270 1433 ntBASIC18.2■□□□□ 0.5
CTCFP49711 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.2■□□□□ 0.5
CTCFP49711 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CTCFP49711 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.2■□□□□ 0.5
CTCFP49711 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
CTCFP49711 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CTCFP49711 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.2■□□□□ 0.5
CTCFP49711 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CTCFP49711 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
CTCFP49711 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CTCFP49711 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.19■□□□□ 0.5
CTCFP49711 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.19■□□□□ 0.5
CTCFP49711 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC18.19■□□□□ 0.5
CTCFP49711 NDUFAB1P1-201ENST00000404262 460 ntBASIC18.19■□□□□ 0.5
CTCFP49711 AZGP1P1-201ENST00000411909 902 ntBASIC18.19■□□□□ 0.5
CTCFP49711 AC079178.1-201ENST00000420915 656 ntBASIC18.19■□□□□ 0.5
CTCFP49711 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC18.19■□□□□ 0.5
CTCFP49711 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC18.19■□□□□ 0.5
CTCFP49711 CNN2P10-201ENST00000443067 918 ntBASIC18.19■□□□□ 0.5
CTCFP49711 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC18.19■□□□□ 0.5
CTCFP49711 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.19■□□□□ 0.5
CTCFP49711 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CTCFP49711 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.19■□□□□ 0.5
CTCFP49711 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC18.19■□□□□ 0.5
CTCFP49711 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC18.19■□□□□ 0.5
CTCFP49711 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.19■□□□□ 0.5
CTCFP49711 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.19■□□□□ 0.5
CTCFP49711 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.19■□□□□ 0.5
CTCFP49711 AC087045.2-201ENST00000606279 1003 ntBASIC18.19■□□□□ 0.5
CTCFP49711 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CTCFP49711 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.19■□□□□ 0.5
CTCFP49711 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CTCFP49711 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.19■□□□□ 0.5
CTCFP49711 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.18■□□□□ 0.5
CTCFP49711 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.18■□□□□ 0.5
CTCFP49711 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CTCFP49711 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CTCFP49711 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC18.18■□□□□ 0.5
CTCFP49711 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.18■□□□□ 0.5
CTCFP49711 MPV17-205ENST00000402310 906 ntTSL 5 BASIC18.18■□□□□ 0.5
CTCFP49711 ACTG1P2-201ENST00000415776 1125 ntBASIC18.18■□□□□ 0.5
CTCFP49711 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC18.18■□□□□ 0.5
CTCFP49711 ACTG1P11-201ENST00000425411 1125 ntBASIC18.18■□□□□ 0.5
CTCFP49711 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 OARD1-204ENST00000464633 717 ntTSL 2 BASIC18.18■□□□□ 0.5
CTCFP49711 KRT18P25-201ENST00000508931 1278 ntBASIC18.18■□□□□ 0.5
CTCFP49711 NSD1-211ENST00000511258 809 ntTSL 3 BASIC18.18■□□□□ 0.5
CTCFP49711 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CTCFP49711 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CTCFP49711 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC18.18■□□□□ 0.5
CTCFP49711 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.18■□□□□ 0.5
CTCFP49711 PPY2P-201ENST00000582808 702 ntBASIC18.18■□□□□ 0.5
CTCFP49711 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC18.18■□□□□ 0.5
CTCFP49711 GMFG-209ENST00000600322 622 ntTSL 5 BASIC18.18■□□□□ 0.5
CTCFP49711 KLK11-210ENST00000600362 759 ntTSL 3 BASIC18.18■□□□□ 0.5
CTCFP49711 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CTCFP49711 AL138709.1-201ENST00000614840 1693 ntBASIC18.18■□□□□ 0.5
CTCFP49711 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CTCFP49711 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms