Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC18.69■□□□□ 0.58
BRCA1P38398 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
BRCA1P38398 AL157813.1-201ENST00000612996 587 ntBASIC18.69■□□□□ 0.58
BRCA1P38398 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
BRCA1P38398 AC009084.3-201ENST00000623356 437 ntBASIC18.69■□□□□ 0.58
BRCA1P38398 NAP1L6-202ENST00000641404 1222 ntBASIC18.69■□□□□ 0.58
BRCA1P38398 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.69■□□□□ 0.58
BRCA1P38398 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRCA1P38398 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
BRCA1P38398 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.68■□□□□ 0.58
BRCA1P38398 AC020916.1-201ENST00000587762 1774 ntBASIC18.68■□□□□ 0.58
BRCA1P38398 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRCA1P38398 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRCA1P38398 FAM90A7P-201ENST00000382628 1395 ntBASIC18.68■□□□□ 0.58
BRCA1P38398 FAM90A23P-201ENST00000400136 1395 ntBASIC18.68■□□□□ 0.58
BRCA1P38398 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.68■□□□□ 0.58
BRCA1P38398 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC18.68■□□□□ 0.58
BRCA1P38398 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC18.68■□□□□ 0.58
BRCA1P38398 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRCA1P38398 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
BRCA1P38398 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRCA1P38398 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
BRCA1P38398 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRCA1P38398 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BRCA1P38398 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRCA1P38398 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRCA1P38398 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRCA1P38398 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
BRCA1P38398 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BRCA1P38398 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.67■□□□□ 0.58
BRCA1P38398 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC18.67■□□□□ 0.58
BRCA1P38398 AP000356.3-201ENST00000382243 753 ntBASIC18.67■□□□□ 0.58
BRCA1P38398 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC18.67■□□□□ 0.58
BRCA1P38398 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.67■□□□□ 0.58
BRCA1P38398 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC18.67■□□□□ 0.58
BRCA1P38398 NAT9-211ENST00000580632 799 ntTSL 3 BASIC18.67■□□□□ 0.58
BRCA1P38398 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
BRCA1P38398 RN7SL163P-201ENST00000583100 276 ntBASIC18.67■□□□□ 0.58
BRCA1P38398 AC005632.3-201ENST00000605544 308 ntBASIC18.67■□□□□ 0.58
BRCA1P38398 CMC2-224ENST00000630396 481 ntTSL 5 BASIC18.67■□□□□ 0.58
BRCA1P38398 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
BRCA1P38398 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.67■□□□□ 0.58
BRCA1P38398 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
BRCA1P38398 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
BRCA1P38398 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC18.67■□□□□ 0.58
BRCA1P38398 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 AC010234.1-201ENST00000494599 870 ntBASIC18.67■□□□□ 0.58
BRCA1P38398 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BRCA1P38398 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC18.67■□□□□ 0.58
BRCA1P38398 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC18.67■□□□□ 0.58
BRCA1P38398 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC18.67■□□□□ 0.58
BRCA1P38398 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRCA1P38398 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
BRCA1P38398 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRCA1P38398 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.66■□□□□ 0.58
BRCA1P38398 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.66■□□□□ 0.58
BRCA1P38398 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
BRCA1P38398 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRCA1P38398 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
BRCA1P38398 MBLAC2-202ENST00000514906 1936 ntBASIC18.66■□□□□ 0.58
BRCA1P38398 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRCA1P38398 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRCA1P38398 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.66■□□□□ 0.58
BRCA1P38398 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRCA1P38398 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
BRCA1P38398 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
BRCA1P38398 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.66■□□□□ 0.58
BRCA1P38398 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRCA1P38398 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRCA1P38398 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRCA1P38398 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRCA1P38398 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRCA1P38398 AC011477.6-201ENST00000604980 1927 ntBASIC18.66■□□□□ 0.58
BRCA1P38398 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.65■□□□□ 0.58
BRCA1P38398 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
BRCA1P38398 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.65■□□□□ 0.58
BRCA1P38398 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 AC005962.1-201ENST00000584100 773 ntBASIC18.65■□□□□ 0.58
BRCA1P38398 RPL35-206ENST00000629845 340 ntTSL 5 BASIC18.65■□□□□ 0.58
BRCA1P38398 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC18.65■□□□□ 0.58
BRCA1P38398 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRCA1P38398 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms