Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
MSX2P35548 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.17■□□□□ 0.02
MSX2P35548 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSX2P35548 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.16■□□□□ 0.02
MSX2P35548 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.16■□□□□ 0.02
MSX2P35548 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
MSX2P35548 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 AL049597.2-201ENST00000565575 961 ntBASIC15.16■□□□□ 0.02
MSX2P35548 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 DBP-204ENST00000599385 709 ntTSL 3 BASIC15.16■□□□□ 0.02
MSX2P35548 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.16■□□□□ 0.02
MSX2P35548 AC107918.4-202ENST00000641623 219 ntBASIC15.16■□□□□ 0.02
MSX2P35548 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
MSX2P35548 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
MSX2P35548 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.16■□□□□ 0.02
MSX2P35548 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
MSX2P35548 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.16■□□□□ 0.02
MSX2P35548 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.16■□□□□ 0.02
MSX2P35548 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSX2P35548 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
MSX2P35548 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
MSX2P35548 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.15■□□□□ 0.02
MSX2P35548 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
MSX2P35548 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 AP001282.1-201ENST00000531301 1499 ntBASIC15.15■□□□□ 0.02
MSX2P35548 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 MIR600HG-201ENST00000449175 5984 ntBASIC15.15■□□□□ 0.02
MSX2P35548 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.15■□□□□ 0.02
MSX2P35548 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 CICP14-201ENST00000629111 2732 ntBASIC15.15■□□□□ 0.02
MSX2P35548 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
MSX2P35548 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.15■□□□□ 0.02
MSX2P35548 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.15■□□□□ 0.02
MSX2P35548 LAGE3P1-201ENST00000425356 484 ntBASIC15.15■□□□□ 0.02
MSX2P35548 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.15■□□□□ 0.02
MSX2P35548 ATP5G2P1-201ENST00000433580 426 ntBASIC15.15■□□□□ 0.02
MSX2P35548 AC245100.5-201ENST00000452108 331 ntBASIC15.15■□□□□ 0.02
MSX2P35548 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.15■□□□□ 0.02
MSX2P35548 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.15■□□□□ 0.02
MSX2P35548 AC087388.1-201ENST00000571370 1112 ntBASIC15.15■□□□□ 0.02
MSX2P35548 AC008667.4-201ENST00000607370 168 ntBASIC15.15■□□□□ 0.02
MSX2P35548 AL365330.1-201ENST00000607459 531 ntBASIC15.15■□□□□ 0.02
MSX2P35548 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
MSX2P35548 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
MSX2P35548 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
MSX2P35548 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSX2P35548 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms