Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
SHMT2P34897 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
SHMT2P34897 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC15.52■□□□□ 0.08
SHMT2P34897 TSSK5P-201ENST00000423978 907 ntBASIC15.52■□□□□ 0.08
SHMT2P34897 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.52■□□□□ 0.08
SHMT2P34897 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.52■□□□□ 0.08
SHMT2P34897 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.52■□□□□ 0.08
SHMT2P34897 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.52■□□□□ 0.08
SHMT2P34897 SPCS2P1-201ENST00000561636 679 ntBASIC15.52■□□□□ 0.08
SHMT2P34897 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.52■□□□□ 0.08
SHMT2P34897 AJ011932.1-201ENST00000621707 465 ntBASIC15.52■□□□□ 0.08
SHMT2P34897 AL033527.5-202ENST00000641632 1098 ntBASIC15.52■□□□□ 0.08
SHMT2P34897 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SHMT2P34897 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
SHMT2P34897 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.52■□□□□ 0.07
SHMT2P34897 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SHMT2P34897 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.52■□□□□ 0.07
SHMT2P34897 AP005117.1-202ENST00000581724 1908 ntBASIC15.52■□□□□ 0.07
SHMT2P34897 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.52■□□□□ 0.07
SHMT2P34897 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SHMT2P34897 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SHMT2P34897 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SHMT2P34897 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.52■□□□□ 0.07
SHMT2P34897 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.52■□□□□ 0.07
SHMT2P34897 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SHMT2P34897 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.51■□□□□ 0.07
SHMT2P34897 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
SHMT2P34897 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SHMT2P34897 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SHMT2P34897 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
SHMT2P34897 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
SHMT2P34897 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 BCRP1-201ENST00000444246 691 ntBASIC15.51■□□□□ 0.07
SHMT2P34897 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 AC004890.2-204ENST00000481968 304 ntBASIC15.51■□□□□ 0.07
SHMT2P34897 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.51■□□□□ 0.07
SHMT2P34897 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.51■□□□□ 0.07
SHMT2P34897 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.51■□□□□ 0.07
SHMT2P34897 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
SHMT2P34897 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 NFIC-211ENST00000641145 8399 ntBASIC15.51■□□□□ 0.07
SHMT2P34897 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
SHMT2P34897 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SHMT2P34897 AC134407.2-201ENST00000625089 1978 ntBASIC15.51■□□□□ 0.07
SHMT2P34897 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SHMT2P34897 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
SHMT2P34897 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.51■□□□□ 0.07
SHMT2P34897 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SHMT2P34897 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SHMT2P34897 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.5■□□□□ 0.07
SHMT2P34897 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
SHMT2P34897 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SHMT2P34897 PPT1-215ENST00000641471 2368 ntBASIC15.5■□□□□ 0.07
SHMT2P34897 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.5■□□□□ 0.07
SHMT2P34897 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms