Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.26□□□□□ -0.45
HOXD3P31249 EEF1DP4-201ENST00000446006 880 ntBASIC12.26□□□□□ -0.45
HOXD3P31249 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC12.26□□□□□ -0.45
HOXD3P31249 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC12.26□□□□□ -0.45
HOXD3P31249 PTK7-212ENST00000476760 902 ntTSL 2 BASIC12.26□□□□□ -0.45
HOXD3P31249 AC011495.1-201ENST00000498085 584 ntBASIC12.26□□□□□ -0.45
HOXD3P31249 AC093004.1-201ENST00000508850 424 ntBASIC12.26□□□□□ -0.45
HOXD3P31249 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC12.26□□□□□ -0.45
HOXD3P31249 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC12.26□□□□□ -0.45
HOXD3P31249 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC12.26□□□□□ -0.45
HOXD3P31249 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXD3P31249 SUOX-214ENST00000551841 906 ntTSL 3 BASIC12.26□□□□□ -0.45
HOXD3P31249 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC12.26□□□□□ -0.45
HOXD3P31249 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC12.26□□□□□ -0.45
HOXD3P31249 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXD3P31249 AC017083.2-201ENST00000608069 979 ntBASIC12.26□□□□□ -0.45
HOXD3P31249 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXD3P31249 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXD3P31249 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXD3P31249 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXD3P31249 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC12.26□□□□□ -0.45
HOXD3P31249 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXD3P31249 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
HOXD3P31249 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
HOXD3P31249 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXD3P31249 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
HOXD3P31249 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC12.26□□□□□ -0.45
HOXD3P31249 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC12.26□□□□□ -0.45
HOXD3P31249 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXD3P31249 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC12.26□□□□□ -0.45
HOXD3P31249 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXD3P31249 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
HOXD3P31249 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC12.26□□□□□ -0.45
HOXD3P31249 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.26□□□□□ -0.45
HOXD3P31249 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
HOXD3P31249 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 REXO1L1P-202ENST00000608646 1974 ntBASIC12.25□□□□□ -0.45
HOXD3P31249 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXD3P31249 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC12.25□□□□□ -0.45
HOXD3P31249 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 MXI1-205ENST00000393134 889 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC12.25□□□□□ -0.45
HOXD3P31249 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC12.25□□□□□ -0.45
HOXD3P31249 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC12.25□□□□□ -0.45
HOXD3P31249 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC12.25□□□□□ -0.45
HOXD3P31249 ZNF890P-202ENST00000530367 1156 ntBASIC12.25□□□□□ -0.45
HOXD3P31249 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
HOXD3P31249 AL391825.1-201ENST00000457671 1364 ntBASIC12.25□□□□□ -0.45
HOXD3P31249 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXD3P31249 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXD3P31249 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC12.25□□□□□ -0.45
HOXD3P31249 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
HOXD3P31249 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
HOXD3P31249 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
HOXD3P31249 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC12.25□□□□□ -0.45
HOXD3P31249 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC12.24□□□□□ -0.45
HOXD3P31249 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
HOXD3P31249 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC12.24□□□□□ -0.45
HOXD3P31249 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
HOXD3P31249 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms