Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
COL8A1P27658 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC13.78□□□□□ -0.2
COL8A1P27658 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL8A1P27658 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 TPR-209ENST00000613151 2478 ntTSL 5 BASIC13.78□□□□□ -0.2
COL8A1P27658 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 CSH2-202ENST00000345366 598 ntTSL 5 BASIC13.78□□□□□ -0.2
COL8A1P27658 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 MIR1202-201ENST00000408529 83 ntBASIC13.78□□□□□ -0.2
COL8A1P27658 AC074338.1-201ENST00000416825 156 ntBASIC13.78□□□□□ -0.2
COL8A1P27658 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 FTLP1-201ENST00000449155 526 ntBASIC13.78□□□□□ -0.2
COL8A1P27658 RPL13AP25-201ENST00000484130 612 ntBASIC13.78□□□□□ -0.2
COL8A1P27658 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.78□□□□□ -0.2
COL8A1P27658 AC091812.3-201ENST00000621362 345 ntBASIC13.78□□□□□ -0.2
COL8A1P27658 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC13.78□□□□□ -0.2
COL8A1P27658 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 TNRC18P3-201ENST00000441896 2691 ntBASIC13.78□□□□□ -0.2
COL8A1P27658 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
COL8A1P27658 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL8A1P27658 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
COL8A1P27658 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
COL8A1P27658 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 AC063926.3-201ENST00000624734 5658 ntBASIC13.78□□□□□ -0.2
COL8A1P27658 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.78□□□□□ -0.2
COL8A1P27658 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 PP12613-201ENST00000424958 2230 ntBASIC13.78□□□□□ -0.2
COL8A1P27658 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC13.78□□□□□ -0.2
COL8A1P27658 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC13.78□□□□□ -0.2
COL8A1P27658 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL8A1P27658 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
COL8A1P27658 AC068587.6-202ENST00000641839 5619 ntBASIC13.77□□□□□ -0.2
COL8A1P27658 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL8A1P27658 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
COL8A1P27658 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL8A1P27658 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC13.77□□□□□ -0.2
COL8A1P27658 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL8A1P27658 TUBB8P12-201ENST00000308911 1335 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 AC006001.1-201ENST00000325130 474 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
COL8A1P27658 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 AZGP1P1-201ENST00000411909 902 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 TUBB7P-202ENST00000428444 1305 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC13.77□□□□□ -0.21
COL8A1P27658 KRT18P64-201ENST00000434946 1219 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC13.77□□□□□ -0.21
COL8A1P27658 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC13.77□□□□□ -0.21
COL8A1P27658 AL133466.1-201ENST00000447582 150 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 AC134698.3-201ENST00000523880 214 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.77□□□□□ -0.21
COL8A1P27658 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.77□□□□□ -0.21
COL8A1P27658 FGFR3P5-201ENST00000564496 886 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 TUBB8P7-204ENST00000567960 1332 ntBASIC13.77□□□□□ -0.21
COL8A1P27658 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL8A1P27658 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms