Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL2A1P02458 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC18.14■□□□□ 0.49
COL2A1P02458 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC18.14■□□□□ 0.49
COL2A1P02458 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC18.14■□□□□ 0.49
COL2A1P02458 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC18.14■□□□□ 0.49
COL2A1P02458 MIR4741-201ENST00000579822 90 ntBASIC18.14■□□□□ 0.49
COL2A1P02458 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC18.14■□□□□ 0.49
COL2A1P02458 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC18.14■□□□□ 0.49
COL2A1P02458 CYGB-203ENST00000589145 788 ntTSL 3 BASIC18.14■□□□□ 0.49
COL2A1P02458 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC18.14■□□□□ 0.49
COL2A1P02458 AL139099.5-201ENST00000635274 300 ntBASIC18.14■□□□□ 0.49
COL2A1P02458 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC18.14■□□□□ 0.49
COL2A1P02458 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
COL2A1P02458 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.13■□□□□ 0.49
COL2A1P02458 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
COL2A1P02458 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.13■□□□□ 0.49
COL2A1P02458 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
COL2A1P02458 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.13■□□□□ 0.49
COL2A1P02458 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.13■□□□□ 0.49
COL2A1P02458 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.13■□□□□ 0.49
COL2A1P02458 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
COL2A1P02458 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 AC092506.1-202ENST00000401022 528 ntBASIC18.13■□□□□ 0.49
COL2A1P02458 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 HLA-K-203ENST00000430151 1046 ntBASIC18.13■□□□□ 0.49
COL2A1P02458 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 AC091804.1-201ENST00000486888 567 ntBASIC18.13■□□□□ 0.49
COL2A1P02458 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.13■□□□□ 0.49
COL2A1P02458 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.13■□□□□ 0.49
COL2A1P02458 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.13■□□□□ 0.49
COL2A1P02458 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 AL662844.4-201ENST00000606367 2838 ntBASIC18.13■□□□□ 0.49
COL2A1P02458 AC015818.8-201ENST00000587907 1519 ntBASIC18.13■□□□□ 0.49
COL2A1P02458 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL2A1P02458 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC18.12■□□□□ 0.49
COL2A1P02458 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.12■□□□□ 0.49
COL2A1P02458 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.12■□□□□ 0.49
COL2A1P02458 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 HARS-202ENST00000415192 1401 ntTSL 2 BASIC18.12■□□□□ 0.49
COL2A1P02458 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL2A1P02458 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC18.12■□□□□ 0.49
COL2A1P02458 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL2A1P02458 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 BTBD6P1-201ENST00000412176 1267 ntBASIC18.12■□□□□ 0.49
COL2A1P02458 AC079178.1-201ENST00000420915 656 ntBASIC18.12■□□□□ 0.49
COL2A1P02458 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC18.12■□□□□ 0.49
COL2A1P02458 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.12■□□□□ 0.49
COL2A1P02458 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC18.12■□□□□ 0.49
COL2A1P02458 KRT8P13-201ENST00000463294 1010 ntBASIC18.12■□□□□ 0.49
COL2A1P02458 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC18.12■□□□□ 0.49
COL2A1P02458 AP006547.1-201ENST00000563435 692 ntBASIC18.12■□□□□ 0.49
COL2A1P02458 DUX4L47-201ENST00000566374 394 ntBASIC18.12■□□□□ 0.49
COL2A1P02458 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC18.12■□□□□ 0.49
COL2A1P02458 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL2A1P02458 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL2A1P02458 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.12■□□□□ 0.49
COL2A1P02458 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
COL2A1P02458 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL2A1P02458 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL2A1P02458 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.11■□□□□ 0.49
COL2A1P02458 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC18.11■□□□□ 0.49
COL2A1P02458 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
COL2A1P02458 MIR663B-201ENST00000408361 115 ntBASIC18.11■□□□□ 0.49
COL2A1P02458 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC18.11■□□□□ 0.49
COL2A1P02458 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL2A1P02458 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms