Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.21■□□□□ 0.02
SEMA3DO95025 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SEMA3DO95025 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.2■□□□□ 0.02
SEMA3DO95025 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.2■□□□□ 0.02
SEMA3DO95025 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SEMA3DO95025 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.2■□□□□ 0.02
SEMA3DO95025 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.2■□□□□ 0.02
SEMA3DO95025 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.2■□□□□ 0.02
SEMA3DO95025 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SEMA3DO95025 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
SEMA3DO95025 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.2■□□□□ 0.02
SEMA3DO95025 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.2■□□□□ 0.02
SEMA3DO95025 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.2■□□□□ 0.02
SEMA3DO95025 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.2■□□□□ 0.02
SEMA3DO95025 SNHG9-202ENST00000564014 471 ntBASIC15.2■□□□□ 0.02
SEMA3DO95025 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
SEMA3DO95025 MIR6080-201ENST00000617359 66 ntBASIC15.2■□□□□ 0.02
SEMA3DO95025 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.2■□□□□ 0.02
SEMA3DO95025 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
SEMA3DO95025 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.2■□□□□ 0.02
SEMA3DO95025 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.2■□□□□ 0.02
SEMA3DO95025 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
SEMA3DO95025 AC020658.6-201ENST00000623564 1870 ntBASIC15.2■□□□□ 0.02
SEMA3DO95025 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SEMA3DO95025 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.2■□□□□ 0.02
SEMA3DO95025 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
SEMA3DO95025 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.19■□□□□ 0.02
SEMA3DO95025 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.19■□□□□ 0.02
SEMA3DO95025 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.19■□□□□ 0.02
SEMA3DO95025 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC15.19■□□□□ 0.02
SEMA3DO95025 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SEMA3DO95025 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
SEMA3DO95025 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 FO393414.2-201ENST00000405153 598 ntBASIC15.19■□□□□ 0.02
SEMA3DO95025 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.19■□□□□ 0.02
SEMA3DO95025 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.19■□□□□ 0.02
SEMA3DO95025 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.19■□□□□ 0.02
SEMA3DO95025 MIR4313-201ENST00000580760 101 ntBASIC15.19■□□□□ 0.02
SEMA3DO95025 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 AC027612.4-201ENST00000605371 583 ntBASIC15.19■□□□□ 0.02
SEMA3DO95025 AL133215.2-201ENST00000609242 977 ntBASIC15.19■□□□□ 0.02
SEMA3DO95025 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.19■□□□□ 0.02
SEMA3DO95025 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SEMA3DO95025 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.19■□□□□ 0.02
SEMA3DO95025 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SEMA3DO95025 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SEMA3DO95025 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.18■□□□□ 0.02
SEMA3DO95025 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.18■□□□□ 0.02
SEMA3DO95025 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.18■□□□□ 0.02
SEMA3DO95025 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.18■□□□□ 0.02
SEMA3DO95025 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.18■□□□□ 0.02
SEMA3DO95025 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 AC022532.1-201ENST00000624563 1728 ntBASIC15.18■□□□□ 0.02
SEMA3DO95025 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SEMA3DO95025 AC018892.3-201ENST00000623986 2499 ntBASIC15.18■□□□□ 0.02
SEMA3DO95025 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
SEMA3DO95025 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
SEMA3DO95025 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms