Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CDKL5O76039 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.38■□□□□ 0.53
CDKL5O76039 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDKL5O76039 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.38■□□□□ 0.53
CDKL5O76039 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 AC107890.1-201ENST00000422478 521 ntBASIC18.38■□□□□ 0.53
CDKL5O76039 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.38■□□□□ 0.53
CDKL5O76039 FAM86GP-201ENST00000448322 971 ntBASIC18.38■□□□□ 0.53
CDKL5O76039 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.38■□□□□ 0.53
CDKL5O76039 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.38■□□□□ 0.53
CDKL5O76039 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 AC069120.2-201ENST00000524091 540 ntBASIC18.38■□□□□ 0.53
CDKL5O76039 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC18.38■□□□□ 0.53
CDKL5O76039 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CDKL5O76039 AC140878.1-201ENST00000565277 250 ntBASIC18.38■□□□□ 0.53
CDKL5O76039 AC051619.7-201ENST00000568314 623 ntBASIC18.38■□□□□ 0.53
CDKL5O76039 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.38■□□□□ 0.53
CDKL5O76039 AC073592.8-201ENST00000624126 511 ntBASIC18.38■□□□□ 0.53
CDKL5O76039 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.38■□□□□ 0.53
CDKL5O76039 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
CDKL5O76039 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 PPT1-215ENST00000641471 2368 ntBASIC18.38■□□□□ 0.53
CDKL5O76039 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDKL5O76039 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 AC073347.1-201ENST00000421633 2643 ntBASIC18.37■□□□□ 0.53
CDKL5O76039 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CDKL5O76039 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CDKL5O76039 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.37■□□□□ 0.53
CDKL5O76039 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.37■□□□□ 0.53
CDKL5O76039 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.37■□□□□ 0.53
CDKL5O76039 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.37■□□□□ 0.53
CDKL5O76039 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.37■□□□□ 0.53
CDKL5O76039 AL138828.2-201ENST00000615812 383 ntBASIC18.37■□□□□ 0.53
CDKL5O76039 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.37■□□□□ 0.53
CDKL5O76039 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.37■□□□□ 0.53
CDKL5O76039 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDKL5O76039 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CDKL5O76039 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CDKL5O76039 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC18.36■□□□□ 0.53
CDKL5O76039 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CDKL5O76039 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CDKL5O76039 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.36■□□□□ 0.53
CDKL5O76039 TARDBPP1-201ENST00000442013 1203 ntBASIC18.36■□□□□ 0.53
CDKL5O76039 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.36■□□□□ 0.53
CDKL5O76039 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDKL5O76039 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms