Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
SDCBPO00560 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.54□□□□□ -0.24
SDCBPO00560 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SDCBPO00560 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC13.54□□□□□ -0.24
SDCBPO00560 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC13.53□□□□□ -0.24
SDCBPO00560 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.53□□□□□ -0.24
SDCBPO00560 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
SDCBPO00560 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 MED15P5-201ENST00000423150 992 ntBASIC13.53□□□□□ -0.24
SDCBPO00560 AC092474.2-201ENST00000424288 719 ntBASIC13.53□□□□□ -0.24
SDCBPO00560 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.53□□□□□ -0.24
SDCBPO00560 KRT18P2-201ENST00000447938 1258 ntBASIC13.53□□□□□ -0.24
SDCBPO00560 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC13.53□□□□□ -0.24
SDCBPO00560 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC13.53□□□□□ -0.24
SDCBPO00560 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC13.53□□□□□ -0.24
SDCBPO00560 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 BX640515.1-201ENST00000617215 977 ntBASIC13.53□□□□□ -0.24
SDCBPO00560 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC13.53□□□□□ -0.24
SDCBPO00560 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 REM2-202ENST00000536884 1331 ntTSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.53□□□□□ -0.24
SDCBPO00560 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC13.53□□□□□ -0.24
SDCBPO00560 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
SDCBPO00560 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC13.53□□□□□ -0.24
SDCBPO00560 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SDCBPO00560 AC011477.6-201ENST00000604980 1927 ntBASIC13.52□□□□□ -0.24
SDCBPO00560 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.52□□□□□ -0.24
SDCBPO00560 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SDCBPO00560 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
SDCBPO00560 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
SDCBPO00560 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.52□□□□□ -0.24
SDCBPO00560 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SDCBPO00560 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SDCBPO00560 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SDCBPO00560 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.52□□□□□ -0.24
SDCBPO00560 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.24
SDCBPO00560 AC023908.3-201ENST00000564211 3047 ntBASIC13.52□□□□□ -0.24
SDCBPO00560 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
SDCBPO00560 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.52□□□□□ -0.25
SDCBPO00560 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC13.52□□□□□ -0.25
SDCBPO00560 AL591424.1-201ENST00000442569 1213 ntBASIC13.52□□□□□ -0.25
SDCBPO00560 AC093724.1-201ENST00000448659 1027 ntBASIC13.52□□□□□ -0.25
SDCBPO00560 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
SDCBPO00560 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC13.52□□□□□ -0.25
SDCBPO00560 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC13.52□□□□□ -0.25
SDCBPO00560 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC13.52□□□□□ -0.25
SDCBPO00560 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC13.52□□□□□ -0.25
SDCBPO00560 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC13.52□□□□□ -0.25
SDCBPO00560 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
SDCBPO00560 QPRT-203ENST00000562473 579 ntTSL 3 BASIC13.52□□□□□ -0.25
SDCBPO00560 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.52□□□□□ -0.25
SDCBPO00560 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC13.52□□□□□ -0.25
SDCBPO00560 AC068137.2-201ENST00000605408 478 ntBASIC13.52□□□□□ -0.25
SDCBPO00560 AL078644.1-201ENST00000609881 752 ntBASIC13.52□□□□□ -0.25
SDCBPO00560 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC13.52□□□□□ -0.25
SDCBPO00560 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC13.52□□□□□ -0.25
SDCBPO00560 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
SDCBPO00560 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC13.52□□□□□ -0.25
SDCBPO00560 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms