Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HIF3AQ9Y2N7 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 DNAJB3-201ENST00000446806 729 ntBASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 CEND1P1-201ENST00000451006 455 ntBASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 AC005829.1-201ENST00000570002 483 ntBASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 AC006058.4-201ENST00000624016 1670 ntBASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HIF3AQ9Y2N7 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 YBX1P5-201ENST00000509441 847 ntBASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms