Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 CSH2-202ENST00000345366 598 ntTSL 5 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 KLK11-210ENST00000600362 759 ntTSL 3 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 ZACNP1-201ENST00000612259 710 ntBASIC19.9■□□□□ 0.78
SCN11AQ9UI33 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCN11AQ9UI33 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.78
SCN11AQ9UI33 REXO1L4P-201ENST00000605109 1937 ntBASIC19.89■□□□□ 0.77
SCN11AQ9UI33 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 CD8B2-202ENST00000417670 633 ntBASIC19.89■□□□□ 0.77
SCN11AQ9UI33 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 AC004898.1-201ENST00000451057 766 ntBASIC19.89■□□□□ 0.77
SCN11AQ9UI33 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 SCARNA20.5-201ENST00000516991 142 ntBASIC19.89■□□□□ 0.77
SCN11AQ9UI33 NCK2-206ENST00000522586 490 ntTSL 5 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 SDHD-202ENST00000525291 790 ntTSL 3 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC19.89■□□□□ 0.77
SCN11AQ9UI33 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 PCDH8P1-201ENST00000428983 2773 ntBASIC19.89■□□□□ 0.77
SCN11AQ9UI33 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCN11AQ9UI33 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 AC004945.1-201ENST00000416738 983 ntBASIC19.88■□□□□ 0.77
SCN11AQ9UI33 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 REEP1-202ENST00000453231 940 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 AL022328.3-201ENST00000607943 679 ntBASIC19.88■□□□□ 0.77
SCN11AQ9UI33 AL021578.1-201ENST00000613646 709 ntBASIC19.88■□□□□ 0.77
SCN11AQ9UI33 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCN11AQ9UI33 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 NME6-203ENST00000415644 849 ntTSL 2 BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 HIST2H2BB-201ENST00000449108 381 ntBASIC19.87■□□□□ 0.77
SCN11AQ9UI33 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.87■□□□□ 0.77
SCN11AQ9UI33 CLUHP2-201ENST00000426660 1303 ntBASIC19.87■□□□□ 0.77
SCN11AQ9UI33 AC055811.4-201ENST00000624039 1754 ntBASIC19.86■□□□□ 0.77
SCN11AQ9UI33 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms