Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 ARSEP1-201ENST00000420443 635 ntBASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 AC005052.1-201ENST00000625181 2492 ntBASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 AC105917.1-201ENST00000506637 2539 ntBASIC17.34■□□□□ 0.37
TRAIPQ9BWF2 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.33■□□□□ 0.37
TRAIPQ9BWF2 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 AC074338.1-201ENST00000416825 156 ntBASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 AC132938.2-201ENST00000579188 680 ntBASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 LINC01115-203ENST00000606068 577 ntBASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 AL591163.1-201ENST00000641757 987 ntBASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TRAIPQ9BWF2 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 TOMM22P5-201ENST00000416399 439 ntBASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 TARDBPP1-201ENST00000442013 1203 ntBASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 RN7SL837P-201ENST00000463010 287 ntBASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms