Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 AC008738.7-201ENST00000609744 511 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 MIR6775-201ENST00000617557 69 ntBASIC4.94□□□□□ -1.62
SYNE1Q8NF91 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SYNE1Q8NF91 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 RN7SL837P-201ENST00000463010 287 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ORC6-206ENST00000568364 888 ntTSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AC091167.2-201ENST00000579581 588 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 RNA5-8SN1-201ENST00000610460 153 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 RNA5-8SN5-202ENST00000612463 153 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 RNA5-8SN4-201ENST00000613359 153 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 RNA5-8SN5-201ENST00000619471 153 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 EPB41L2-203ENST00000368128 4456 ntAPPRIS P3 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 RAD18-204ENST00000418463 563 ntTSL 4 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 RAD18-205ENST00000421052 582 ntTSL 3 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 GOLGA6L4-203ENST00000510439 4563 ntAPPRIS P2 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 NOP2-211ENST00000540228 668 ntTSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CETN4P-206ENST00000642099 2168 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms